Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MUA07_RS08415 Genome accession   NZ_CP094750
Coordinates   1735663..1736265 (-) Length   200 a.a.
NCBI ID   WP_108630181.1    Uniprot ID   -
Organism   Staphylococcus aureus strain IVB6248     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1730663..1741265
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MUA07_RS08395 (MUA07_08395) yajC 1732159..1732419 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  MUA07_RS08400 (MUA07_08400) tgt 1732438..1733577 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  MUA07_RS08405 (MUA07_08405) queA 1733600..1734625 (-) 1026 WP_001019179.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  MUA07_RS08410 (MUA07_08410) ruvB 1734627..1735631 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  MUA07_RS08415 (MUA07_08415) ruvA 1735663..1736265 (-) 603 WP_108630181.1 Holliday junction branch migration protein RuvA Machinery gene
  MUA07_RS08420 (MUA07_08420) - 1736279..1736734 (-) 456 WP_000368902.1 ACT domain-containing protein -
  MUA07_RS08425 (MUA07_08425) obgE 1736747..1738039 (-) 1293 WP_000496098.1 GTPase ObgE -
  MUA07_RS08430 (MUA07_08430) rpmA 1738789..1739073 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  MUA07_RS08435 (MUA07_08435) - 1739085..1739405 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  MUA07_RS08440 (MUA07_08440) rplU 1739411..1739719 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  MUA07_RS08445 (MUA07_08445) mreD 1740138..1740668 (-) 531 WP_001259925.1 rod shape-determining protein MreD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22248.39 Da        Isoelectric Point: 5.6622

>NTDB_id=578549 MUA07_RS08415 WP_108630181.1 1735663..1736265(-) (ruvA) [Staphylococcus aureus strain IVB6248]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGNKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=578549 MUA07_RS08415 WP_108630181.1 1735663..1736265(-) (ruvA) [Staphylococcus aureus strain IVB6248]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTACGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAACAAAACGGCAAGACAGATTGTTTTAGATTTAAAAGGTAAAGTGAAAATCA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACATCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae R6

45.226

99.5

0.45
  ruvA Streptococcus pneumoniae D39

45.226

99.5

0.45
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.211

99.5

0.42