Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   KQ255_RS00280 Genome accession   NZ_CP076821
Coordinates   58150..58677 (-) Length   175 a.a.
NCBI ID   WP_000695059.1    Uniprot ID   A0A0D5YDP9
Organism   Acinetobacter baumannii strain UC22850     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 53150..63677
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ255_RS00260 (KQ255_00260) - 53339..54214 (-) 876 WP_000218810.1 hypothetical protein -
  KQ255_RS00265 (KQ255_00265) aroB 54230..55312 (-) 1083 WP_001193997.1 3-dehydroquinate synthase -
  KQ255_RS00270 (KQ255_00270) aroK 55341..55910 (-) 570 WP_000643712.1 shikimate kinase AroK -
  KQ255_RS00275 (KQ255_00275) pilQ 55922..58087 (-) 2166 WP_001017040.1 type IV pilus secretin PilQ family protein Machinery gene
  KQ255_RS00280 (KQ255_00280) pilP 58150..58677 (-) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  KQ255_RS00285 (KQ255_00285) pilO 58688..59428 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  KQ255_RS00290 (KQ255_00290) pilN 59425..60066 (-) 642 WP_000201229.1 PilN domain-containing protein Machinery gene
  KQ255_RS00295 (KQ255_00295) pilM 60066..61124 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19371.59 Da        Isoelectric Point: 9.0270

>NTDB_id=578266 KQ255_RS00280 WP_000695059.1 58150..58677(-) (pilP) [Acinetobacter baumannii strain UC22850]
MKIKQITLCVLASVVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=578266 KQ255_RS00280 WP_000695059.1 58150..58677(-) (pilP) [Acinetobacter baumannii strain UC22850]
ATGAAAATTAAGCAAATTACTCTTTGTGTTTTGGCGAGTGTTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCACAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTTGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCACTTGAAGCTTTAAATATGAAAGGGAGCATGCG
TAATAATCGAGGGCAGATATTGGCCCTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATCACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCGGATGGTCGAGAAGGC
TATGTCGAAAGACCGAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D5YDP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

98.286

100

0.983
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714