Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   KQ255_RS00290 Genome accession   NZ_CP076821
Coordinates   59425..60066 (-) Length   213 a.a.
NCBI ID   WP_000201229.1    Uniprot ID   A0A0J0ZM99
Organism   Acinetobacter baumannii strain UC22850     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 54425..65066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ255_RS00270 (KQ255_00270) aroK 55341..55910 (-) 570 WP_000643712.1 shikimate kinase AroK -
  KQ255_RS00275 (KQ255_00275) pilQ 55922..58087 (-) 2166 WP_001017040.1 type IV pilus secretin PilQ family protein Machinery gene
  KQ255_RS00280 (KQ255_00280) pilP 58150..58677 (-) 528 WP_000695059.1 pilus assembly protein PilP Machinery gene
  KQ255_RS00285 (KQ255_00285) pilO 58688..59428 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  KQ255_RS00290 (KQ255_00290) pilN 59425..60066 (-) 642 WP_000201229.1 PilN domain-containing protein Machinery gene
  KQ255_RS00295 (KQ255_00295) pilM 60066..61124 (-) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  KQ255_RS00300 (KQ255_00300) ponA 61286..63841 (+) 2556 WP_000736662.1 penicillin-binding protein PBP1a -
  KQ255_RS00305 (KQ255_00305) - 63859..64683 (-) 825 WP_001990541.1 putative RNA methyltransferase -
  KQ255_RS00310 (KQ255_00310) - 64686..65018 (-) 333 WP_000169598.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24063.40 Da        Isoelectric Point: 5.3968

>NTDB_id=578268 KQ255_RS00290 WP_000201229.1 59425..60066(-) (pilN) [Acinetobacter baumannii strain UC22850]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPSAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKSASSLLPRVEDHYGSFVVTVDLGEMGVTTTDDSAKPSTGESVGVAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=578268 KQ255_RS00290 WP_000201229.1 59425..60066(-) (pilN) [Acinetobacter baumannii strain UC22850]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTCATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATTCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCATCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGTCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGACCACAACGGATGATTCTGCTAAGCCATCTACAGGCGAAAGTGTGGGGGTCGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0J0ZM99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

99.061

100

0.991
  comN Acinetobacter baylyi ADP1

72.038

99.061

0.714