Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   KQ256_RS01265 Genome accession   NZ_CP076814
Coordinates   268428..268910 (+) Length   160 a.a.
NCBI ID   WP_001046413.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC21460     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 263428..273910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ256_RS01255 (KQ256_01255) pilX 263731..264549 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KQ256_RS01260 (KQ256_01260) pilY1 264561..268415 (+) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene
  KQ256_RS01265 (KQ256_01265) pilY2 268428..268910 (+) 483 WP_001046413.1 type IV pilin protein Machinery gene
  KQ256_RS01270 (KQ256_01270) pilE 268907..269332 (+) 426 WP_005130737.1 type IV pilin protein Machinery gene
  KQ256_RS01275 (KQ256_01275) rpsP 269479..269730 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  KQ256_RS01280 (KQ256_01280) rimM 269750..270298 (+) 549 WP_005130741.1 ribosome maturation factor RimM -
  KQ256_RS01285 (KQ256_01285) trmD 270344..271084 (+) 741 WP_000464599.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  KQ256_RS01290 (KQ256_01290) rplS 271292..271660 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  KQ256_RS01295 (KQ256_01295) - 271713..272654 (-) 942 WP_098713316.1 triacylglycerol lipase -
  KQ256_RS01300 (KQ256_01300) - 272769..273803 (-) 1035 WP_046693070.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17602.87 Da        Isoelectric Point: 8.8351

>NTDB_id=578171 KQ256_RS01265 WP_001046413.1 268428..268910(+) (pilY2) [Acinetobacter baumannii strain UC21460]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTRGNLLTNSAANGQTWVIRATTTDSRNFNFIAKNSGIRCQSLTVTAVDNDCGGTTTCNTCEANSEVWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=578171 KQ256_RS01265 WP_001046413.1 268428..268910(+) (pilY2) [Acinetobacter baumannii strain UC21460]
ATGAATAAATACTCTATTCTACGGTTCAATCAGGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTAGAACAGCATAAATCAAGAAATTTTACTTATAGGGGTTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACCAGAGGTAATTTATTAACAAATTCTGCTGCTAATGGTCAAAC
ATGGGTAATTAGAGCAACCACAACAGATTCGAGAAATTTTAATTTTATTGCTAAAAATTCAGGTATACGTTGTCAAAGTT
TAACAGTTACAGCTGTTGATAATGATTGTGGTGGTACGACTACTTGTAATACATGTGAAGCGAACAGTGAGGTTTGGCAG
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-133)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

93.125

100

0.931
  comE Acinetobacter baylyi ADP1

39.535

100

0.425