Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   KQ256_RS01255 Genome accession   NZ_CP076814
Coordinates   263731..264549 (+) Length   272 a.a.
NCBI ID   WP_000149377.1    Uniprot ID   A0A009ITJ0
Organism   Acinetobacter baumannii strain UC21460     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 258731..269549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ256_RS01220 (KQ256_01220) - 259313..259443 (-) 131 Protein_235 hypothetical protein -
  KQ256_RS01225 (KQ256_01225) rpoZ 259482..259760 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KQ256_RS01230 (KQ256_01230) gmk 259833..260462 (-) 630 WP_000015937.1 guanylate kinase -
  KQ256_RS01235 (KQ256_01235) ispH 260585..261535 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KQ256_RS01240 (KQ256_01240) fimU 261705..262178 (+) 474 WP_001214067.1 GspH/FimT family pseudopilin Machinery gene
  KQ256_RS01245 (KQ256_01245) pilV 262172..262732 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  KQ256_RS01250 (KQ256_01250) pilW 262733..263734 (+) 1002 WP_000079192.1 PilW family protein Machinery gene
  KQ256_RS01255 (KQ256_01255) pilX 263731..264549 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KQ256_RS01260 (KQ256_01260) pilY1 264561..268415 (+) 3855 WP_023896142.1 PilC/PilY family type IV pilus protein Machinery gene
  KQ256_RS01265 (KQ256_01265) pilY2 268428..268910 (+) 483 WP_001046413.1 type IV pilin protein Machinery gene
  KQ256_RS01270 (KQ256_01270) pilE 268907..269332 (+) 426 WP_005130737.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.70 Da        Isoelectric Point: 5.6905

>NTDB_id=578169 KQ256_RS01255 WP_000149377.1 263731..264549(+) (pilX) [Acinetobacter baumannii strain UC21460]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMPDIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=578169 KQ256_RS01255 WP_000149377.1 263731..264549(+) (pilX) [Acinetobacter baumannii strain UC21460]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGAGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTAGTTGAAGACGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGCCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCATCAACCTCTTTAGAAACTT
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009ITJ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989