Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   KQ256_RS01240 Genome accession   NZ_CP076814
Coordinates   261705..262178 (+) Length   157 a.a.
NCBI ID   WP_001214067.1    Uniprot ID   A0A7U3Y304
Organism   Acinetobacter baumannii strain UC21460     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 256705..267178
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ256_RS01215 (KQ256_01215) - 257168..259273 (-) 2106 WP_001117590.1 HD domain-containing protein -
  KQ256_RS01220 (KQ256_01220) - 259313..259443 (-) 131 Protein_235 hypothetical protein -
  KQ256_RS01225 (KQ256_01225) rpoZ 259482..259760 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KQ256_RS01230 (KQ256_01230) gmk 259833..260462 (-) 630 WP_000015937.1 guanylate kinase -
  KQ256_RS01235 (KQ256_01235) ispH 260585..261535 (+) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KQ256_RS01240 (KQ256_01240) fimU 261705..262178 (+) 474 WP_001214067.1 GspH/FimT family pseudopilin Machinery gene
  KQ256_RS01245 (KQ256_01245) pilV 262172..262732 (+) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  KQ256_RS01250 (KQ256_01250) pilW 262733..263734 (+) 1002 WP_000079192.1 PilW family protein Machinery gene
  KQ256_RS01255 (KQ256_01255) pilX 263731..264549 (+) 819 WP_000149377.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16823.40 Da        Isoelectric Point: 8.5355

>NTDB_id=578166 KQ256_RS01240 WP_001214067.1 261705..262178(+) (fimU) [Acinetobacter baumannii strain UC21460]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDGNQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=578166 KQ256_RS01240 WP_001214067.1 261705..262178(+) (fimU) [Acinetobacter baumannii strain UC21460]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCAGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGGTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGACGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAACGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Y304

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994