Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   KQ256_RS01125 Genome accession   NZ_CP076814
Coordinates   236177..236917 (+) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain UC21460     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 231177..241917
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ256_RS01110 (KQ256_01110) ponA 231765..234320 (-) 2556 WP_000736677.1 penicillin-binding protein PBP1a -
  KQ256_RS01115 (KQ256_01115) pilM 234481..235539 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  KQ256_RS01120 (KQ256_01120) pilN 235539..236180 (+) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  KQ256_RS01125 (KQ256_01125) pilO 236177..236917 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  KQ256_RS01130 (KQ256_01130) pilP 236928..237455 (+) 528 WP_024436689.1 pilus assembly protein PilP Machinery gene
  KQ256_RS01135 (KQ256_01135) pilQ 237518..239683 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  KQ256_RS01140 (KQ256_01140) aroK 239695..240264 (+) 570 WP_000643712.1 shikimate kinase AroK -
  KQ256_RS01145 (KQ256_01145) aroB 240293..241375 (+) 1083 WP_001193999.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=578162 KQ256_RS01125 WP_000076101.1 236177..236917(+) (pilO) [Acinetobacter baumannii strain UC21460]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=578162 KQ256_RS01125 WP_000076101.1 236177..236917(+) (pilO) [Acinetobacter baumannii strain UC21460]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAGAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTGCCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTAGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACTGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683