Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   KQ256_RS01130 Genome accession   NZ_CP076814
Coordinates   236928..237455 (+) Length   175 a.a.
NCBI ID   WP_024436689.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC21460     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 231928..242455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ256_RS01115 (KQ256_01115) pilM 234481..235539 (+) 1059 WP_002014066.1 pilus assembly protein PilM Machinery gene
  KQ256_RS01120 (KQ256_01120) pilN 235539..236180 (+) 642 WP_000201226.1 PilN domain-containing protein Machinery gene
  KQ256_RS01125 (KQ256_01125) pilO 236177..236917 (+) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  KQ256_RS01130 (KQ256_01130) pilP 236928..237455 (+) 528 WP_024436689.1 pilus assembly protein PilP Machinery gene
  KQ256_RS01135 (KQ256_01135) pilQ 237518..239683 (+) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  KQ256_RS01140 (KQ256_01140) aroK 239695..240264 (+) 570 WP_000643712.1 shikimate kinase AroK -
  KQ256_RS01145 (KQ256_01145) aroB 240293..241375 (+) 1083 WP_001193999.1 3-dehydroquinate synthase -
  KQ256_RS01150 (KQ256_01150) - 241391..242266 (+) 876 WP_000218799.1 hypothetical protein -

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19433.66 Da        Isoelectric Point: 8.9898

>NTDB_id=578163 KQ256_RS01130 WP_024436689.1 236928..237455(+) (pilP) [Acinetobacter baumannii strain UC21460]
MKIKQITLYVLACAVLIGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=578163 KQ256_RS01130 WP_024436689.1 236928..237455(+) (pilP) [Acinetobacter baumannii strain UC21460]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTATCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCGCAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCTCTTGAAGCTTTAAATATGAAAGGGAGCATGCG
AAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

99.429

100

0.994
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714