Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   KQ253_RS18615 Genome accession   NZ_CP076812
Coordinates   3841697..3842107 (+) Length   136 a.a.
NCBI ID   WP_253526335.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC23022     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3836697..3847107
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ253_RS18600 (KQ253_18520) - 3837686..3839992 (+) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  KQ253_RS18605 (KQ253_18525) - 3840037..3840810 (-) 774 WP_000682843.1 SDR family oxidoreductase -
  KQ253_RS18610 (KQ253_18530) mazG 3840922..3841728 (+) 807 WP_000359487.1 nucleoside triphosphate pyrophosphohydrolase -
  KQ253_RS18615 (KQ253_18535) comEA 3841697..3842107 (+) 411 WP_253526335.1 ComEA family DNA-binding protein Machinery gene
  KQ253_RS18620 (KQ253_18540) pcnB 3842232..3843695 (+) 1464 WP_001194201.1 polynucleotide adenylyltransferase PcnB -
  KQ253_RS18625 (KQ253_18545) folK 3843692..3844174 (+) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  KQ253_RS18630 (KQ253_18550) panB 3844220..3845029 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  KQ253_RS18635 (KQ253_18555) panC 3845033..3845881 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  KQ253_RS18640 (KQ253_18560) rapZ 3845904..3846755 (+) 852 WP_000821671.1 RNase adapter RapZ -
  KQ253_RS18645 (KQ253_18565) - 3846752..3847021 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15642.88 Da        Isoelectric Point: 10.4473

>NTDB_id=578154 KQ253_RS18615 WP_253526335.1 3841697..3842107(+) (comEA) [Acinetobacter baumannii strain UC23022]
MQYSMRFWKNKYFVLIILCLGVISPSVHAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=578154 KQ253_RS18615 WP_253526335.1 3841697..3842107(+) (comEA) [Acinetobacter baumannii strain UC23022]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TCACGCACAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

41.985

96.324

0.404