Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   KQ251_RS16015 Genome accession   NZ_CP076804
Coordinates   3329904..3330644 (-) Length   246 a.a.
NCBI ID   WP_000076101.1    Uniprot ID   N9LH62
Organism   Acinetobacter baumannii strain UC24371     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3324904..3335644
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ251_RS15995 (KQ251_15925) aroB 3325446..3326528 (-) 1083 WP_045900091.1 3-dehydroquinate synthase -
  KQ251_RS16000 (KQ251_15930) aroK 3326557..3327126 (-) 570 WP_045900089.1 shikimate kinase AroK -
  KQ251_RS16005 (KQ251_15935) pilQ 3327138..3329303 (-) 2166 WP_045900087.1 type IV pilus secretin PilQ Machinery gene
  KQ251_RS16010 (KQ251_15940) pilP 3329366..3329893 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  KQ251_RS16015 (KQ251_15945) pilO 3329904..3330644 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  KQ251_RS16020 (KQ251_15950) pilN 3330641..3331282 (-) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  KQ251_RS16025 (KQ251_15955) pilM 3331282..3332340 (-) 1059 WP_031950501.1 pilus assembly protein PilM Machinery gene
  KQ251_RS16030 (KQ251_15960) ponA 3332502..3335057 (+) 2556 WP_000736677.1 penicillin-binding protein PBP1a -

Sequence

Protein


Download         Length: 246 a.a.        Molecular weight: 27819.59 Da        Isoelectric Point: 4.8357

>NTDB_id=578061 KQ251_RS16015 WP_000076101.1 3329904..3330644(-) (pilO) [Acinetobacter baumannii strain UC24371]
MSQDELQELSLEQLSAKKKKFNLDKFLQQFNTLDMNNYGSWPISVKITCWIFIFFAVLALGYFIVIQPKLQAIDNAQAQE
SNLLNEFREKDSKLRNLQQYQVQLQEMQANFNQQLEQLPKETEIPSLVEDINLTGVNSGLKFKNIRLEDEVKQEIFIEQP
IAIEATGDYHAFGAFVSSIAALPRIVTMHDFTVDVSPAKDNKSDIPVLNYSIKAKTYRYVGATDTSEQTGKAPAASASTN
TTVQPK

Nucleotide


Download         Length: 741 bp        

>NTDB_id=578061 KQ251_RS16015 WP_000076101.1 3329904..3330644(-) (pilO) [Acinetobacter baumannii strain UC24371]
ATGAGTCAAGACGAACTTCAAGAATTGTCATTAGAACAATTATCTGCAAAGAAAAAGAAATTTAATCTCGATAAATTCCT
TCAGCAATTTAATACGCTGGATATGAACAACTACGGTAGTTGGCCAATATCTGTAAAAATTACGTGTTGGATTTTTATTT
TCTTTGCTGTGTTAGCTTTGGGGTATTTCATTGTTATTCAACCGAAATTACAAGCTATTGATAATGCTCAAGCTCAGGAA
AGCAATTTATTAAACGAATTTCGTGAAAAAGACTCGAAATTACGTAACCTGCAACAGTATCAGGTACAGCTTCAAGAAAT
GCAGGCAAATTTCAACCAGCAACTAGAGCAGTTACCAAAAGAAACTGAGATTCCGAGTTTAGTTGAAGATATCAACTTAA
CAGGAGTGAACTCTGGATTGAAATTTAAAAATATTCGCTTGGAAGATGAAGTAAAGCAGGAAATTTTTATTGAGCAACCA
ATTGCCATAGAAGCGACCGGGGACTATCACGCATTTGGAGCTTTTGTAAGTAGTATCGCTGCTTTGCCTCGTATTGTAAC
CATGCACGATTTTACTGTTGATGTATCGCCAGCTAAAGATAACAAGTCTGATATTCCTGTGCTGAACTATTCCATTAAAG
CAAAAACATACCGATACGTAGGGGCAACAGATACATCGGAGCAAACAGGCAAAGCTCCAGCAGCATCTGCTTCAACGAAC
ACTACTGTTCAGCCGAAATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(73-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LH62

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Acinetobacter baumannii D1279779

100

100

1
  comO Acinetobacter baylyi ADP1

69.421

98.374

0.683