Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   KQ251_RS16010 Genome accession   NZ_CP076804
Coordinates   3329366..3329893 (-) Length   175 a.a.
NCBI ID   WP_000695065.1    Uniprot ID   N9K1N5
Organism   Acinetobacter baumannii strain UC24371     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3324366..3334893
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ251_RS15990 (KQ251_15920) - 3324555..3325430 (-) 876 WP_000218807.1 hypothetical protein -
  KQ251_RS15995 (KQ251_15925) aroB 3325446..3326528 (-) 1083 WP_045900091.1 3-dehydroquinate synthase -
  KQ251_RS16000 (KQ251_15930) aroK 3326557..3327126 (-) 570 WP_045900089.1 shikimate kinase AroK -
  KQ251_RS16005 (KQ251_15935) pilQ 3327138..3329303 (-) 2166 WP_045900087.1 type IV pilus secretin PilQ Machinery gene
  KQ251_RS16010 (KQ251_15940) pilP 3329366..3329893 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  KQ251_RS16015 (KQ251_15945) pilO 3329904..3330644 (-) 741 WP_000076101.1 type 4a pilus biogenesis protein PilO Machinery gene
  KQ251_RS16020 (KQ251_15950) pilN 3330641..3331282 (-) 642 WP_000201223.1 PilN domain-containing protein Machinery gene
  KQ251_RS16025 (KQ251_15955) pilM 3331282..3332340 (-) 1059 WP_031950501.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 175 a.a.        Molecular weight: 19419.64 Da        Isoelectric Point: 8.9898

>NTDB_id=578060 KQ251_RS16010 WP_000695065.1 3329366..3329893(-) (pilP) [Acinetobacter baumannii strain UC24371]
MKIKQITLYVLACAVLVGCDSRIDAVNQEMANIRNQPPLPIEPAPIFTPVPQFNYAAHQLKSPFMPSSLAAELKIMAGKR
VYPNFSRAPQPLESYALEALNMKGSMRNNRGQILALIQTPDQQIERVQVGNYMGMNQGRITHISPTQIDLVEIVPDGREG
YVERPRTLVLIGPAP

Nucleotide


Download         Length: 528 bp        

>NTDB_id=578060 KQ251_RS16010 WP_000695065.1 3329366..3329893(-) (pilP) [Acinetobacter baumannii strain UC24371]
ATGAAAATTAAGCAAATTACTCTTTATGTTTTGGCGTGTGCTGTGCTTGTCGGTTGTGATTCAAGAATTGATGCAGTAAA
TCAGGAAATGGCCAATATTCGTAATCAGCCGCCACTCCCTATTGAACCAGCACCGATTTTTACTCCTGTACCGCAATTTA
ATTACGCTGCTCATCAATTAAAAAGCCCATTTATGCCAAGTTCTCTAGCTGCCGAGCTCAAGATTATGGCGGGGAAACGG
GTTTATCCGAATTTCTCACGTGCGCCGCAACCACTCGAAAGTTATGCTCTTGAAGCTTTAAATATGAAAGGGAGCATGCG
AAATAATCGAGGGCAGATATTGGCCTTGATCCAGACACCGGATCAGCAGATTGAACGGGTACAAGTGGGTAACTATATGG
GTATGAATCAGGGCCGTATTACCCATATTAGTCCAACCCAGATTGATCTGGTTGAAATCGTACCTGATGGTCGAGAAGGC
TATGTCGAAAGACCAAGAACCTTGGTCTTGATTGGGCCTGCACCCTAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(27-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1N5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Acinetobacter baumannii D1279779

100

100

1
  comL Acinetobacter baylyi ADP1

71.839

99.429

0.714