Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   KQ251_RS15885 Genome accession   NZ_CP076804
Coordinates   3302273..3303091 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain UC24371     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3297273..3308091
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ251_RS15870 (KQ251_15800) pilE 3297490..3297915 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  KQ251_RS15875 (KQ251_15805) pilY2 3297912..3298394 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  KQ251_RS15880 (KQ251_15810) pilY1 3298407..3302261 (-) 3855 WP_032050775.1 PilC/PilY family type IV pilus protein Machinery gene
  KQ251_RS15885 (KQ251_15815) pilX 3302273..3303091 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KQ251_RS15890 (KQ251_15820) pilW 3303088..3304089 (-) 1002 WP_045900102.1 PilW family protein Machinery gene
  KQ251_RS15895 (KQ251_15825) pilV 3304090..3304650 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  KQ251_RS15900 (KQ251_15830) fimU 3304644..3305117 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  KQ251_RS15905 (KQ251_15835) ispH 3305287..3306237 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KQ251_RS15910 (KQ251_15840) gmk 3306360..3306989 (+) 630 WP_000015937.1 guanylate kinase -
  KQ251_RS15915 (KQ251_15845) rpoZ 3307062..3307340 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KQ251_RS15920 (KQ251_15850) - 3307379..3307509 (+) 131 Protein_3114 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=578054 KQ251_RS15885 WP_000149374.1 3302273..3303091(-) (pilX) [Acinetobacter baumannii strain UC24371]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=578054 KQ251_RS15885 WP_000149374.1 3302273..3303091(-) (pilX) [Acinetobacter baumannii strain UC24371]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993