Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   KQ251_RS15900 Genome accession   NZ_CP076804
Coordinates   3304644..3305117 (-) Length   157 a.a.
NCBI ID   WP_001214065.1    Uniprot ID   N9K1Q3
Organism   Acinetobacter baumannii strain UC24371     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3299644..3310117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ251_RS15885 (KQ251_15815) pilX 3302273..3303091 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KQ251_RS15890 (KQ251_15820) pilW 3303088..3304089 (-) 1002 WP_045900102.1 PilW family protein Machinery gene
  KQ251_RS15895 (KQ251_15825) pilV 3304090..3304650 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  KQ251_RS15900 (KQ251_15830) fimU 3304644..3305117 (-) 474 WP_001214065.1 GspH/FimT family pseudopilin Machinery gene
  KQ251_RS15905 (KQ251_15835) ispH 3305287..3306237 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KQ251_RS15910 (KQ251_15840) gmk 3306360..3306989 (+) 630 WP_000015937.1 guanylate kinase -
  KQ251_RS15915 (KQ251_15845) rpoZ 3307062..3307340 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KQ251_RS15920 (KQ251_15850) - 3307379..3307509 (+) 131 Protein_3114 hypothetical protein -
  KQ251_RS15925 (KQ251_15855) - 3307549..3309654 (+) 2106 WP_001117590.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.43 Da        Isoelectric Point: 8.5355

>NTDB_id=578057 KQ251_RS15900 WP_001214065.1 3304644..3305117(-) (fimU) [Acinetobacter baumannii strain UC24371]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=578057 KQ251_RS15900 WP_001214065.1 3304644..3305117(-) (fimU) [Acinetobacter baumannii strain UC24371]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCATT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCTGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9K1Q3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

100

100

1