Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   KQ252_RS13405 Genome accession   NZ_CP076801
Coordinates   2808987..2809397 (+) Length   136 a.a.
NCBI ID   WP_002041921.1    Uniprot ID   A0AB36M071
Organism   Acinetobacter baumannii strain UC25604     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2803987..2814397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ252_RS13390 (KQ252_13365) - 2804976..2807282 (+) 2307 WP_000259109.1 bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase -
  KQ252_RS13395 (KQ252_13370) - 2807327..2808100 (-) 774 WP_045901326.1 SDR family oxidoreductase -
  KQ252_RS13400 (KQ252_13375) mazG 2808212..2809018 (+) 807 WP_045901327.1 nucleoside triphosphate pyrophosphohydrolase -
  KQ252_RS13405 (KQ252_13380) comEA 2808987..2809397 (+) 411 WP_002041921.1 ComEA family DNA-binding protein Machinery gene
  KQ252_RS13410 (KQ252_13385) pcnB 2809522..2810985 (+) 1464 WP_045901330.1 polynucleotide adenylyltransferase PcnB -
  KQ252_RS13415 (KQ252_13390) folK 2810982..2811464 (+) 483 WP_000219213.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  KQ252_RS13420 (KQ252_13395) panB 2811510..2812319 (+) 810 WP_000624763.1 3-methyl-2-oxobutanoate hydroxymethyltransferase -
  KQ252_RS13425 (KQ252_13400) panC 2812323..2813171 (+) 849 WP_000846362.1 pantoate--beta-alanine ligase -
  KQ252_RS13430 (KQ252_13405) rapZ 2813194..2814045 (+) 852 WP_000821671.1 RNase adapter RapZ -
  KQ252_RS13435 (KQ252_13410) - 2814042..2814311 (+) 270 WP_000567533.1 HPr family phosphocarrier protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15668.92 Da        Isoelectric Point: 10.3828

>NTDB_id=578020 KQ252_RS13405 WP_002041921.1 2808987..2809397(+) (comEA) [Acinetobacter baumannii strain UC25604]
MQYSMRFWKNKYFVLIILCLGVISPSVYAQSFDQNFQEWKAKQQMYDQKLNITKSSHSNGSKISQTKNFNDSTGQIHLNQ
ANVNEFQQLKGIGEKKAQAIVEYRQKNGSFKNIDEIKNVKGIGPAIFEKNKSRLAL

Nucleotide


Download         Length: 411 bp        

>NTDB_id=578020 KQ252_RS13405 WP_002041921.1 2808987..2809397(+) (comEA) [Acinetobacter baumannii strain UC25604]
ATGCAATACAGCATGAGATTTTGGAAAAATAAGTATTTTGTTTTAATAATTTTGTGCTTGGGAGTAATTTCACCTTCGGT
TTACGCACAATCTTTTGATCAAAACTTTCAAGAATGGAAGGCTAAACAGCAGATGTATGACCAAAAGTTAAACATCACTA
AGTCTTCTCATTCTAATGGTTCTAAAATTTCTCAAACTAAAAATTTTAATGACTCTACAGGGCAAATTCATTTGAATCAG
GCGAATGTAAATGAGTTTCAGCAGTTAAAAGGTATAGGTGAGAAAAAGGCTCAAGCGATTGTAGAATACAGACAAAAGAA
CGGTAGCTTTAAAAATATTGACGAAATTAAAAACGTTAAAGGAATTGGACCAGCTATTTTTGAAAAAAATAAATCGCGTT
TAGCCTTATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(74-134)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Acinetobacter baumannii strain A118

97.059

100

0.971
  comEA Acinetobacter baumannii D1279779

96.324

100

0.963
  comEA Acinetobacter baylyi ADP1

46.847

81.618

0.382