Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilY2   Type   Machinery gene
Locus tag   KQ252_RS08730 Genome accession   NZ_CP076801
Coordinates   1812904..1813386 (-) Length   160 a.a.
NCBI ID   WP_001046417.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain UC25604     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1807904..1818386
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ252_RS08695 (KQ252_08680) - 1808011..1809045 (+) 1035 WP_002062194.1 lipase secretion chaperone -
  KQ252_RS08700 (KQ252_08685) - 1809160..1810101 (+) 942 WP_100228732.1 triacylglycerol lipase -
  KQ252_RS08705 (KQ252_08690) rplS 1810154..1810522 (-) 369 WP_000014562.1 50S ribosomal protein L19 -
  KQ252_RS08710 (KQ252_08695) trmD 1810730..1811470 (-) 741 WP_000464598.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  KQ252_RS08715 (KQ252_08700) rimM 1811516..1812064 (-) 549 WP_002062174.1 ribosome maturation factor RimM -
  KQ252_RS08720 (KQ252_08705) rpsP 1812084..1812335 (-) 252 WP_000260334.1 30S ribosomal protein S16 -
  KQ252_RS08725 (KQ252_08710) pilE 1812482..1812907 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  KQ252_RS08730 (KQ252_08715) pilY2 1812904..1813386 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  KQ252_RS08735 (KQ252_08720) pilY1 1813399..1817253 (-) 3855 WP_032050775.1 PilC/PilY family type IV pilus protein Machinery gene
  KQ252_RS08740 (KQ252_08725) pilX 1817265..1818083 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17516.77 Da        Isoelectric Point: 8.4817

>NTDB_id=577992 KQ252_RS08730 WP_001046417.1 1812904..1813386(-) (pilY2) [Acinetobacter baumannii strain UC25604]
MNKYSILRFNQGVTLIELMVVIVIVAIFASIAIPSYQSYSRRATASAAKSEILKLAEQLEQHKSRNFTYRGFTTTSITLP
RGGYTIQITDDTTTGNLLTNAAANGQTWVIKATTTDSRNFNFIAKNSGLRCQSLTATAVDNDCGGTVTCNVCETNSENWQ

Nucleotide


Download         Length: 483 bp        

>NTDB_id=577992 KQ252_RS08730 WP_001046417.1 1812904..1813386(-) (pilY2) [Acinetobacter baumannii strain UC25604]
ATGAATAAGTACTCTATTCTACGGTTCAATCAAGGGGTTACCTTGATTGAGCTTATGGTCGTGATTGTTATCGTTGCTAT
TTTTGCTTCAATTGCTATCCCTTCATATCAAAGTTATAGCCGTAGAGCTACTGCATCTGCGGCTAAAAGTGAAATTTTGA
AATTAGCTGAACAATTGGAACAGCATAAATCAAGAAATTTTACTTATAGGGGGTTTACCACAACCTCTATAACCCTACCT
CGCGGGGGATATACGATTCAGATTACTGATGATACGACGACAGGAAATTTATTGACGAATGCTGCTGCAAATGGGCAAAC
ATGGGTCATTAAAGCGACAACTACAGATTCAAGAAACTTTAATTTTATTGCTAAGAATTCAGGTTTGCGTTGTCAAAGTT
TAACAGCTACGGCTGTTGATAATGACTGTGGTGGAACAGTCACTTGCAATGTATGTGAAACAAATAGTGAGAATTGGCAA
TGA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(34-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(10-32)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilY2 Acinetobacter baumannii D1279779

98.125

100

0.981
  comE Acinetobacter baylyi ADP1

41.279

100

0.444