Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   KQ252_RS08740 Genome accession   NZ_CP076801
Coordinates   1817265..1818083 (-) Length   272 a.a.
NCBI ID   WP_000149374.1    Uniprot ID   N9LAR9
Organism   Acinetobacter baumannii strain UC25604     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1812265..1823083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ252_RS08725 (KQ252_08710) pilE 1812482..1812907 (-) 426 WP_000788342.1 type IV pilin protein Machinery gene
  KQ252_RS08730 (KQ252_08715) pilY2 1812904..1813386 (-) 483 WP_001046417.1 type IV pilin protein Machinery gene
  KQ252_RS08735 (KQ252_08720) pilY1 1813399..1817253 (-) 3855 WP_032050775.1 PilC/PilY family type IV pilus protein Machinery gene
  KQ252_RS08740 (KQ252_08725) pilX 1817265..1818083 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  KQ252_RS08745 (KQ252_08730) pilW 1818080..1819081 (-) 1002 WP_045900102.1 PilW family protein Machinery gene
  KQ252_RS08750 (KQ252_08735) pilV 1819082..1819642 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  KQ252_RS08755 (KQ252_08740) fimU 1819636..1820109 (-) 474 WP_001214065.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  KQ252_RS08760 (KQ252_08745) ispH 1820279..1821229 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  KQ252_RS08765 (KQ252_08750) gmk 1821352..1821981 (+) 630 WP_000015937.1 guanylate kinase -
  KQ252_RS08770 (KQ252_08755) rpoZ 1822054..1822332 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  KQ252_RS08775 (KQ252_08760) - 1822371..1822501 (+) 131 Protein_1715 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28832.66 Da        Isoelectric Point: 5.6905

>NTDB_id=577994 KQ252_RS08740 WP_000149374.1 1817265..1818083(-) (pilX) [Acinetobacter baumannii strain UC25604]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANHNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=577994 KQ252_RS08740 WP_000149374.1 1817265..1818083(-) (pilX) [Acinetobacter baumannii strain UC25604]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCCAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACCATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9LAR9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

99.265

100

0.993