NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	KRO88_RS01990	Genome accession	NZ_CP076739
Coordinates	410912..411772 (-)	Length	286 a.a.
NCBI ID	WP_279446766.1	Uniprot ID	-
Organism	Acinetobacter baumannii strain X4-584
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 405912..416772

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KRO88_RS01965 (KRO88_01945)	-	406803..408113 (+)	1311	WP_272412430.1	tetratricopeptide repeat protein	-
KRO88_RS01970 (KRO88_01950)	-	408190..408516 (+)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
KRO88_RS01975 (KRO88_01955)	rlmB	408618..409367 (+)	750	WP_279446767.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
KRO88_RS01980 (KRO88_01960)	-	409403..410317 (+)	915	WP_000075015.1	DMT family transporter	-
KRO88_RS01985 (KRO88_01965)	coaE	410314..410910 (-)	597	WP_000874125.1	dephospho-CoA kinase	-
KRO88_RS01990 (KRO88_01970)	pilD	410912..411772 (-)	861	WP_279446766.1	A24 family peptidase	Machinery gene
KRO88_RS01995 (KRO88_01975)	pilC	411772..412998 (-)	1227	WP_279446765.1	type II secretion system F family protein	Machinery gene
KRO88_RS02000 (KRO88_01980)	pilB	413028..414740 (-)	1713	WP_001274988.1	type IV-A pilus assembly ATPase PilB	Machinery gene
KRO88_RS02005 (KRO88_01985)	tpiA	415032..415826 (+)	795	WP_078202916.1	triose-phosphate isomerase	-
KRO88_RS02010 (KRO88_01990)	secG	415839..416168 (+)	330	WP_000555570.1	preprotein translocase subunit SecG	-

Sequence

Protein

Download Length: 286 a.a. Molecular weight: 32170.58 Da Isoelectric Point: 7.5058

                                >NTDB_id=577893 KRO88_RS01990 WP_279446766.1 410912..411772(-) (pilD) [Acinetobacter baumannii strain X4-584]

MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHERLTLNKPASSCPACQQR

IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLVLTWVLIALTFIDFDTQLLPDR

FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL

LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

Download Length: 861 bp

                                >NTDB_id=577893 KRO88_RS01990 WP_279446766.1 410912..411772(-) (pilD) [Acinetobacter baumannii strain X4-584]

ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG

TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAGCAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA

ATCCCGAGCAACCGATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACGG

ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGTCATTGCCAGCACCCGATCAG

TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGTCCAACCATACAAA

TGCTTTTTGGACTCGTCCTCACATGGGTACTGATAGCCCTTACTTTTATTGATTTCGATACACAATTATTGCCTGATCGC

TTTACCTTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG

TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG

GCGACTTTAAATTGCTTGCAGCATTAGGTGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA

CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT

TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(138-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(22-128)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Acinetobacter baumannii D1279779	99.65	100	0.997
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	52.941	95.105	0.503
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	47.348	92.308	0.437

Detailed information NTG0577893