Detailed information    

insolico Bioinformatically predicted

Overview

Name   hexA   Type   Machinery gene
Locus tag   CCX78_RS08015 Genome accession   NZ_AP017931
Coordinates   1542379..1544982 (-) Length   867 a.a.
NCBI ID   WP_096585420.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain LK-145     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1537379..1549982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX78_RS08000 (LASAK_01574) ruvA 1538250..1538861 (-) 612 WP_011374075.1 Holliday junction branch migration protein RuvA Machinery gene
  CCX78_RS10340 - 1539272..1539833 (-) 562 Protein_1533 TIGR00730 family Rossman fold protein -
  CCX78_RS10345 (LASAK_01577) - 1539849..1540394 (-) 546 WP_056947792.1 Maf family protein -
  CCX78_RS08010 (LASAK_01578) hexB 1540394..1542355 (-) 1962 WP_096585417.1 DNA mismatch repair endonuclease MutL Machinery gene
  CCX78_RS08015 (LASAK_01579) hexA 1542379..1544982 (-) 2604 WP_096585420.1 DNA mismatch repair protein MutS Machinery gene
  CCX78_RS08020 (LASAK_01580) - 1545004..1545810 (-) 807 WP_016264637.1 TIGR00282 family metallophosphoesterase -
  CCX78_RS08025 - 1546068..1547893 (-) 1826 Protein_1538 APC family permease -

Sequence

Protein


Download         Length: 867 a.a.        Molecular weight: 96817.55 Da        Isoelectric Point: 5.2508

>NTDB_id=57782 CCX78_RS08015 WP_096585420.1 1542379..1544982(-) (hexA) [Latilactobacillus sakei strain LK-145]
MPQKTKETPMMAQYQKVKDQYPDAFLFYRLGDFYELFNDDAVKASQLLELTLTARNKNAADPIPMCGVPHHAAQNYIDIL
VDQGYKVAICEQMEDPKTAKGMVKREVVQLVTPGTVMDEKAGHAKQNNYLTAVVAQGDQFGFAYTDLSTGEMKVSQISSL
DVLLNEMLSLQTKEVVVNHDVPSEVVQAFVQQQILVSYQDEGADTAEVSFVSQNISQPLALAVIKQLVVYLATTQKRHLG
HLQRAQAYEPSQYLKLDHSAKMNLELTASLRTGHKSGTLLWLLDETKTAMGGRLLKQWLERPLLDLNQIKNRQNQVASFL
QHYFERTNLQEALTKVYDLERLAGRVAFGSVNGRDLIQLKTSLEQIPKIKDVLTGINETQAFDQALTRLDPVDDVRTLIE
TAINPDSPISVTDGGIIQDGYDEQLDQYRNAMSNGKQWLAQLEAQEREATGIHNLKIGFNRVFGYYIEVTRANLSSLPEG
RYERKQTLTNAERFITPELKEKEQLILEAEERSTALEYELFTQVREQVKLQIERLQTLAKGVAALDVLQSFAVVSESYHY
VQPTLRTDSREIDLVDGRHPVVEKVLGRQKYIPNAVQMGKETDMLLITGPNMSGKSTYMRQLALTVIMAQMGCFVPAKSA
NLPVFDQIFTRIGAADDLISGQSTFMVEMMEANRAIMSATANSLILFDEIGRGTATYDGMALAQAIIEYIHDHVHAKTLF
STHYHELTALADTLTALHNVHVGAVEENGELVFLHKMLAGPADKSYGIHVAKLAGMPETLLQRADVILDQLEDKPKAPVQ
PATVAPAQPTAAAVEEQMALFEPEVAAPVDKKTDKVVAAIKNFDLMSATPLEALNQLYEWQKQLNKH

Nucleotide


Download         Length: 2604 bp        

>NTDB_id=57782 CCX78_RS08015 WP_096585420.1 1542379..1544982(-) (hexA) [Latilactobacillus sakei strain LK-145]
ATGCCGCAAAAAACAAAAGAAACGCCAATGATGGCCCAATATCAAAAGGTTAAGGATCAATATCCAGACGCCTTTTTATT
TTATAGATTGGGTGATTTTTACGAATTATTCAATGACGATGCTGTTAAAGCATCACAACTTCTAGAATTAACGCTGACAG
CGCGCAATAAGAATGCAGCAGACCCCATTCCAATGTGTGGGGTGCCCCATCATGCGGCGCAAAACTATATTGATATTTTA
GTGGATCAAGGCTATAAGGTTGCCATTTGCGAACAGATGGAAGATCCTAAAACGGCTAAGGGCATGGTCAAACGCGAAGT
TGTTCAATTAGTAACACCTGGGACTGTGATGGACGAAAAAGCCGGTCACGCTAAACAAAATAATTATTTAACGGCAGTCG
TTGCACAGGGCGATCAATTTGGCTTTGCCTATACGGATTTATCCACAGGTGAAATGAAGGTTAGCCAAATCAGTAGTTTA
GATGTGTTATTAAACGAAATGTTGAGTTTACAAACCAAAGAAGTGGTTGTGAATCATGATGTCCCAAGCGAAGTCGTCCA
AGCCTTTGTCCAACAACAAATCTTGGTTTCTTATCAAGATGAGGGGGCCGATACGGCAGAGGTCAGTTTTGTTTCTCAAA
ACATCTCACAACCACTAGCGTTAGCCGTCATTAAACAATTAGTTGTTTATTTAGCAACGACGCAAAAGCGGCACTTGGGT
CATTTACAACGCGCCCAAGCCTATGAACCTTCTCAATACTTGAAGTTGGATCATTCGGCTAAGATGAACCTCGAATTGAC
GGCTTCATTACGAACTGGTCATAAGAGCGGGACGTTATTGTGGCTACTGGATGAAACAAAGACTGCGATGGGTGGTCGCT
TATTAAAACAATGGTTGGAACGACCATTGTTGGATTTAAACCAGATTAAGAACCGGCAAAACCAAGTCGCTAGTTTCTTA
CAGCATTACTTTGAACGGACGAACCTTCAAGAAGCCCTAACTAAAGTTTATGATTTGGAACGTCTAGCAGGCCGCGTTGC
TTTTGGGAGCGTTAATGGTCGCGATTTGATTCAATTAAAAACATCCTTAGAACAGATTCCAAAGATTAAAGATGTTTTGA
CGGGCATTAACGAAACGCAGGCTTTTGATCAAGCGTTAACGCGTTTGGATCCAGTTGATGATGTGCGGACGTTAATTGAA
ACAGCGATTAACCCGGATTCACCGATTTCAGTGACTGATGGTGGGATTATTCAAGATGGTTACGACGAACAACTTGATCA
ATACCGCAATGCGATGTCTAACGGCAAGCAGTGGTTGGCGCAATTAGAGGCGCAAGAACGAGAAGCTACGGGCATTCATA
ATTTGAAAATCGGCTTTAACCGCGTCTTTGGGTATTATATCGAAGTCACGCGGGCTAACTTGAGTTCATTACCGGAAGGG
CGGTATGAACGCAAACAAACGTTAACCAACGCCGAACGATTCATCACACCGGAATTAAAAGAAAAAGAACAACTGATTTT
AGAGGCGGAAGAACGCTCAACCGCTCTAGAATACGAATTGTTTACCCAAGTTCGGGAACAAGTGAAGTTACAAATTGAAC
GGCTCCAAACATTGGCTAAAGGCGTAGCGGCCCTAGATGTCTTGCAAAGTTTTGCGGTCGTCAGCGAAAGCTACCACTAT
GTCCAACCAACATTAAGAACTGATAGTCGCGAAATTGATTTAGTCGATGGCCGTCATCCGGTGGTTGAAAAGGTATTGGG
ACGCCAAAAATATATCCCGAATGCCGTTCAAATGGGTAAAGAGACGGATATGTTATTAATTACCGGGCCTAATATGTCTG
GTAAAAGTACCTACATGCGGCAATTGGCCTTAACGGTCATTATGGCGCAAATGGGTTGTTTTGTACCTGCCAAGTCAGCG
AACTTGCCTGTATTTGATCAAATCTTTACCCGCATTGGTGCGGCAGATGATTTGATTTCAGGGCAAAGTACGTTTATGGT
AGAAATGATGGAAGCTAACCGTGCGATTATGAGTGCGACCGCCAATAGTTTAATTCTCTTCGATGAAATTGGTCGGGGAA
CGGCCACTTATGATGGGATGGCCTTGGCACAAGCGATTATCGAATATATTCATGATCACGTCCACGCCAAGACGCTCTTT
TCAACGCATTATCATGAACTGACGGCTTTAGCCGATACGTTGACCGCCCTTCATAACGTGCATGTTGGTGCAGTTGAGGA
AAACGGCGAGTTGGTCTTCTTACACAAGATGTTGGCCGGACCTGCGGATAAGTCTTACGGGATTCATGTCGCTAAATTAG
CAGGCATGCCAGAAACCTTATTACAACGGGCCGATGTTATTTTAGATCAATTAGAAGATAAACCCAAAGCACCGGTGCAA
CCAGCAACAGTCGCGCCAGCACAACCGACTGCAGCGGCTGTCGAAGAACAGATGGCGCTTTTTGAACCAGAAGTGGCAGC
TCCGGTTGATAAGAAAACAGATAAAGTGGTAGCGGCAATTAAGAATTTTGATTTGATGAGCGCCACACCACTAGAAGCCC
TCAATCAATTATACGAGTGGCAAAAGCAATTAAATAAACATTAA

Domains

Predicted by InterProScan.

MutS family domain IV (MutS_IV)

(420-512)

MutS domain III (MutS_III)

(263-552)

MutS domain I (MutS_I)

(8-119)

MutS domain II (MutS_II)

(128-243)

MutS domain V (MutS_V)

(605-792)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

52.139

99.769

0.52
  mutS Pseudomonas stutzeri strain ATCC 17587

38.54

100

0.39