Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   KQY33_RS01070 Genome accession   NZ_CP076733
Coordinates   225554..227182 (+) Length   542 a.a.
NCBI ID   WP_168443817.1    Uniprot ID   -
Organism   Photobacterium damselae strain Pdd2008     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 220554..232182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQY33_RS01050 (KQY33_01055) pilM 222684..223682 (+) 999 WP_284633916.1 type IV pilus assembly protein PilM -
  KQY33_RS01055 (KQY33_01060) - 223679..224320 (+) 642 WP_068945318.1 PilN domain-containing protein -
  KQY33_RS01060 (KQY33_01065) - 224317..224907 (+) 591 WP_068945317.1 type 4a pilus biogenesis protein PilO -
  KQY33_RS01065 (KQY33_01070) - 224916..225431 (+) 516 WP_036764704.1 pilus assembly protein PilP -
  KQY33_RS01070 (KQY33_01075) pilQ 225554..227182 (+) 1629 WP_168443817.1 type IV pilus secretin PilQ family protein Machinery gene
  KQY33_RS01075 (KQY33_01080) aroK 227512..228030 (+) 519 WP_036765246.1 shikimate kinase AroK -
  KQY33_RS01080 (KQY33_01085) aroB 228060..229139 (+) 1080 WP_005302661.1 3-dehydroquinate synthase -
  KQY33_RS01085 (KQY33_01090) - 229154..230662 (+) 1509 WP_284633917.1 AAA family ATPase -
  KQY33_RS01090 (KQY33_01095) dam 230770..231612 (+) 843 WP_065172417.1 adenine-specific DNA-methyltransferase -
  KQY33_RS01095 (KQY33_01100) - 231596..231793 (-) 198 WP_036764707.1 DUF2970 domain-containing protein -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 59072.70 Da        Isoelectric Point: 4.7466

>NTDB_id=577800 KQY33_RS01070 WP_168443817.1 225554..227182(+) (pilQ) [Photobacterium damselae strain Pdd2008]
MNIVNNQITDLDFKRDNRGRGVLTVQLAKPQSLVDMRRSGKQLHIDIFDTAIKDDMLYVLDVVDFATVVRSIETFRTEKG
SKLILNMAGVFDYDYQLKGSRLEVVLNAQKKKASSTAKAKQGKIDYKGKPISINFQDVPVRNVLQLVAEYNDFNLVVSDT
VQGNVTLRLDDVPWPQVLDIILQSKGLDKRVQGSVVLIAPKSELATNERQEMEAKRKEDELASLRSELIQINYAKAGDIA
DLLLGTKDGVSMLSQRGSLHVDERTNAIIIKDIPESIDSIEEIITALDIPVKQVQIEARIVTVDEGDIDELGVRWGVVNQ
NGSTTIGGSIEGNLASSGLLGDDATVDDFLNVNLGAITPGASSIAFQVAKLGDILLDLELSALQAESKAEIISSPRLVTT
NKKAAYIEQGTEIPYLEAASSGAVSVDFKKAVLSLMVTPQITPDDKLVLDLLVTQDKVGETVVTGTGEAVAIDTQRIGTQ
VLVNNGETVVLGGIYQHQVNNSVRKVPLLGDIPGLGVLFRHKLQEMGKRELLIFVTPKIITQ

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=577800 KQY33_RS01070 WP_168443817.1 225554..227182(+) (pilQ) [Photobacterium damselae strain Pdd2008]
ATGAATATTGTGAATAACCAAATCACCGACTTAGATTTTAAGCGTGATAATCGTGGACGAGGTGTGCTCACTGTTCAGTT
AGCCAAACCTCAATCTCTGGTTGATATGCGCCGTTCAGGGAAGCAATTACATATCGATATCTTTGATACCGCGATTAAAG
ATGACATGTTGTATGTTCTCGATGTAGTCGACTTTGCAACGGTTGTTCGTTCTATTGAAACATTTCGCACCGAGAAAGGC
AGTAAGCTGATTCTCAATATGGCTGGCGTGTTTGATTATGATTACCAATTAAAAGGCTCCCGTCTTGAAGTTGTTTTGAA
CGCCCAGAAAAAGAAAGCCAGCAGTACAGCCAAGGCTAAGCAAGGCAAAATTGATTATAAAGGTAAGCCCATCTCCATTA
ACTTCCAAGATGTTCCTGTGCGTAACGTATTGCAGTTAGTTGCCGAATATAATGATTTTAATCTCGTGGTTTCCGATACT
GTGCAGGGTAATGTGACCTTACGTCTTGATGATGTGCCTTGGCCGCAAGTGCTTGATATTATTTTGCAATCAAAAGGCTT
GGATAAACGAGTTCAAGGTTCTGTGGTACTGATTGCGCCAAAATCTGAGTTGGCAACCAATGAGCGTCAAGAGATGGAAG
CCAAACGTAAAGAAGATGAGTTAGCTTCGCTTCGTTCGGAGCTGATTCAAATTAATTACGCTAAAGCAGGAGATATCGCA
GACCTTTTACTCGGAACGAAAGATGGAGTCAGTATGCTATCTCAACGCGGGTCTTTGCATGTTGATGAGCGTACTAATGC
CATAATCATTAAAGATATTCCTGAGAGTATTGATAGCATTGAAGAGATTATCACGGCACTAGATATTCCCGTTAAACAGG
TTCAGATAGAAGCTCGTATTGTTACTGTTGATGAAGGGGATATTGACGAGTTAGGGGTACGTTGGGGTGTCGTTAATCAA
AACGGTAGTACAACCATTGGGGGCTCAATTGAAGGTAACTTGGCCAGTTCGGGCTTATTGGGTGATGACGCAACTGTTGA
TGATTTCTTAAATGTAAATTTAGGTGCAATTACTCCTGGGGCATCGAGTATTGCATTTCAGGTGGCAAAACTGGGCGATA
TTTTGCTCGATCTTGAATTATCCGCTCTACAGGCAGAATCAAAAGCAGAGATTATTTCTAGTCCTCGATTAGTAACCACC
AATAAAAAAGCGGCCTACATCGAACAAGGTACAGAGATCCCTTATTTAGAAGCGGCATCTAGTGGTGCGGTATCGGTAGA
CTTTAAAAAGGCCGTATTGAGTTTGATGGTCACACCACAAATTACCCCTGATGATAAATTGGTGCTCGATCTACTGGTAA
CGCAAGATAAAGTAGGGGAAACAGTTGTTACCGGAACCGGGGAAGCGGTCGCTATCGATACTCAACGAATTGGCACGCAA
GTTTTGGTCAATAATGGCGAGACTGTAGTCTTAGGGGGTATCTATCAGCATCAGGTGAATAATTCTGTCCGTAAAGTCCC
TTTGTTGGGCGATATTCCAGGATTGGGCGTATTGTTTCGTCATAAGCTGCAAGAGATGGGCAAGCGTGAACTGTTGATTT
TCGTCACACCCAAAATTATCACCCAGTAA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(153-201)

Bacterial type II and III secretion system protein (Secretin)

(382-540)

Bacterial type II/III secretion system short domain (Secretin_N)

(227-293)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae strain A1552

64.007

99.446

0.637
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

64.007

99.446

0.637
  pilQ Vibrio campbellii strain DS40M4

61.861

100

0.625
  pilQ Legionella pneumophila strain Lp02

42.831

100

0.43
  pilQ Legionella pneumophila strain ERS1305867

42.831

100

0.43
  pilQ Pseudomonas aeruginosa PAK

41.103

100

0.426
  pilQ Acinetobacter baumannii strain A118

39.138

100

0.419
  pilQ Acinetobacter baumannii D1279779

39.138

100

0.419
  comQ Acinetobacter baylyi ADP1

40.248

100

0.419