Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   KP952_RS19750 Genome accession   NZ_CP076731
Coordinates   3718772..3718891 (+) Length   39 a.a.
NCBI ID   WP_009968329.1    Uniprot ID   A0A199WEM2
Organism   Bacillus subtilis subsp. subtilis strain Miz-8     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 3713772..3723891
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP952_RS19730 (KP952_19730) albG 3713940..3714641 (+) 702 WP_069837830.1 antilisterial bacteriocin subtilosin biosynthesis protein AlbG -
  KP952_RS19735 (KP952_19735) ywhL 3714647..3716023 (-) 1377 WP_069837831.1 YncE family protein -
  KP952_RS19740 (KP952_19740) ywhK 3716062..3717413 (-) 1352 Protein_3860 YncE family protein -
  KP952_RS22180 - 3717410..3717640 (-) 231 Protein_3861 hypothetical protein -
  KP952_RS19745 (KP952_19745) rapF 3717643..3718788 (+) 1146 WP_069837832.1 response regulator aspartate phosphatase RapF Regulator
  KP952_RS19750 (KP952_19750) phrF 3718772..3718891 (+) 120 WP_009968329.1 phosphatase RapF inhibitor PhrF Regulator
  KP952_RS19755 (KP952_19755) - 3718989..3719416 (+) 428 Protein_3864 YbaK/EbsC family protein -
  KP952_RS19760 (KP952_19760) speB 3719481..3720353 (-) 873 WP_003227545.1 agmatinase -
  KP952_RS19765 (KP952_19765) speE 3720414..3721244 (-) 831 WP_003227543.1 spermidine synthase -
  KP952_RS19770 (KP952_19770) pbpG 3721446..3723521 (+) 2076 WP_069837833.1 transglycosylase domain-containing protein -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4199.10 Da        Isoelectric Point: 10.4997

>NTDB_id=577795 KP952_RS19750 WP_009968329.1 3718772..3718891(+) (phrF) [Bacillus subtilis subsp. subtilis strain Miz-8]
MKLKSKLLLSCLALSTVFVATTIANAPTHQIEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=577795 KP952_RS19750 WP_009968329.1 3718772..3718891(+) (phrF) [Bacillus subtilis subsp. subtilis strain Miz-8]
ATGAAATTGAAGTCTAAACTATTACTCTCTTGTCTGGCTCTAAGCACTGTGTTCGTGGCAACAACTATTGCAAATGCACC
TACACACCAAATTGAAGTTGCACAACGAGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WEM2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

100

100

1
  phrC Bacillus subtilis subsp. subtilis str. 168

48.718

100

0.487