Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KQ224_RS04425 Genome accession   NZ_CP076721
Coordinates   877005..877499 (-) Length   164 a.a.
NCBI ID   WP_171989336.1    Uniprot ID   -
Organism   Streptococcus parasuis strain H35     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 872005..882499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ224_RS04410 (KQ224_04410) - 874796..875740 (+) 945 WP_171989337.1 magnesium transporter CorA family protein -
  KQ224_RS04415 (KQ224_04415) - 875756..876412 (+) 657 WP_216807141.1 DUF1129 domain-containing protein -
  KQ224_RS04420 (KQ224_04420) rpsR 876733..876972 (-) 240 WP_002939250.1 30S ribosomal protein S18 -
  KQ224_RS04425 (KQ224_04425) ssb 877005..877499 (-) 495 WP_171989336.1 single-stranded DNA-binding protein Machinery gene
  KQ224_RS04430 (KQ224_04430) rpsF 877511..877801 (-) 291 WP_216807142.1 30S ribosomal protein S6 -
  KQ224_RS04435 (KQ224_04435) - 877943..878932 (-) 990 WP_171989334.1 lipoate--protein ligase -
  KQ224_RS04440 (KQ224_04440) - 879016..879861 (-) 846 Protein_892 family 1 glycosylhydrolase -
  KQ224_RS11430 - 879922..880059 (-) 138 Protein_893 transcription antiterminator BglG -
  KQ224_RS11435 - 880120..880254 (-) 135 WP_253952866.1 CAT RNA binding domain-containing protein -
  KQ224_RS04450 (KQ224_04450) - 880412..881260 (-) 849 WP_216807143.1 HAD family hydrolase -
  KQ224_RS04455 (KQ224_04455) trpA 881667..882473 (-) 807 WP_130554642.1 tryptophan synthase subunit alpha -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18129.89 Da        Isoelectric Point: 4.7294

>NTDB_id=577571 KQ224_RS04425 WP_171989336.1 877005..877499(-) (ssb) [Streptococcus parasuis strain H35]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINVVIWRQQAENLANWAKKGALIGVTGRIQTR
SYDNQQGQRVYVTEVVAESFQLLESRTAREGQGGGYSAGNSFAGGNDYNSPYQAPAQSTPNFAREESPFGANNPMDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=577571 KQ224_RS04425 WP_171989336.1 877005..877499(-) (ssb) [Streptococcus parasuis strain H35]
ATGATTAATAATGTAGTATTGGTTGGTCGCATGACCCGTGATGCAGAACTTCGTTATACTCCGTCTAACCAGGCTGTTGC
GACTTTTACCTTGGCGGTTAACCGCAATTTTAAAAATCAAAATGGTGAACGGGAAGCGGACTTTATTAACGTAGTCATTT
GGCGCCAACAAGCTGAAAATTTGGCGAATTGGGCTAAAAAAGGTGCGCTGATTGGTGTTACAGGTCGTATTCAGACTCGT
AGCTATGATAACCAACAGGGACAACGTGTCTACGTTACAGAGGTAGTTGCAGAAAGTTTCCAACTTTTGGAAAGCCGTAC
TGCCCGTGAAGGCCAAGGGGGCGGTTATTCAGCTGGTAATTCCTTTGCTGGTGGCAATGATTATAACTCGCCTTATCAAG
CGCCTGCGCAATCTACACCGAACTTCGCTCGAGAAGAAAGTCCATTTGGAGCAAACAATCCAATGGATATATCAGACGAT
GACCTACCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.897

100

0.604
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.558

100

0.604
  ssbB Streptococcus sobrinus strain NIDR 6715-7

55.046

66.463

0.366