Detailed information    

insolico Bioinformatically predicted

Overview


Name   ccpA   Type   Regulator
Locus tag   KQ224_RS03360 Genome accession   NZ_CP076721
Coordinates   663836..664837 (-) Length   333 a.a.
NCBI ID   WP_216807287.1    Uniprot ID   -
Organism   Streptococcus parasuis strain H35     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 658836..669837
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ224_RS11400 - 660318..660689 (-) 372 Protein_670 MazG-like protein -
  KQ224_RS03345 (KQ224_03345) - 660953..661327 (-) 375 WP_216807042.1 hypothetical protein -
  KQ224_RS03350 (KQ224_03350) - 661342..662655 (-) 1314 WP_174845888.1 glycosyltransferase family 4 protein -
  KQ224_RS03355 (KQ224_03355) - 662676..663719 (-) 1044 WP_216807043.1 glycosyltransferase family 4 protein -
  KQ224_RS03360 (KQ224_03360) ccpA 663836..664837 (-) 1002 WP_216807287.1 catabolite control protein A Regulator
  KQ224_RS03365 (KQ224_03365) - 665042..666127 (+) 1086 WP_216807045.1 Xaa-Pro peptidase family protein -
  KQ224_RS03370 (KQ224_03370) - 666379..667818 (-) 1440 WP_001028141.1 bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia -
  KQ224_RS03375 (KQ224_03375) - 667819..668211 (-) 393 WP_000393259.1 GNAT family N-acetyltransferase -
  KQ224_RS03380 (KQ224_03380) tgt 668248..669390 (-) 1143 WP_105127463.1 tRNA guanosine(34) transglycosylase Tgt -

Sequence


Protein


Download         Length: 333 a.a.        Molecular weight: 36820.84 Da        Isoelectric Point: 5.5299

>NTDB_id=577567 KQ224_RS03360 WP_216807287.1 663836..664837(-) (ccpA) [Streptococcus parasuis strain H35]
MNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYFA
TLAKGIDDIADMYKYNIVLANSDENDEKEINVINTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDYAAASSDAVKLLAKNNKKIAFVSGPLVDDINGKVRFSGYKEGLQANGLEFNEGLVFESKYKYEEGYVLAERVLNAG
ATAAYIAEDEIASGLLNGISDRGIKVPEEFEIITSDDSQVTKYTRPNLTSINQPIYDIGAIAMRMLTKIMHKEELDNREV
ILNHGIKERKSTK

Nucleotide


Download         Length: 1002 bp        

>NTDB_id=577567 KQ224_RS03360 WP_216807287.1 663836..664837(-) (ccpA) [Streptococcus parasuis strain H35]
ATGAATACAGACGATACCGTGACGATTTATGACGTTGCGCGTGAAGCTGGTGTGTCAATGGCTACAGTCAGTCGTGTAGT
CAATGGTAATAAAAATGTCAAGGAAAACACTCGTAAAAAAGTGTTAGAGGTGATTGATCGATTAGATTATCGTCCAAATG
CTGTTGCGCGTGGTTTGGCAAGTAAAAAAACGACAACTGTGGGGGTTGTGATTCCAAATATTGCCAATGCCTATTTTGCA
ACCTTGGCTAAGGGGATTGATGACATTGCTGATATGTATAAGTATAATATCGTATTGGCAAACAGTGATGAAAATGACGA
GAAAGAAATTAATGTTATTAATACATTGTTTTCTAAGCAAGTCGATGGTATTATCTTCATGGGCTATCATCTGACAGATA
AGATTCGTGCAGAATTTTCACGTTCACGCACTCCGATTGTATTAGCAGGTACTGTCGATTTGGAACACCAATTGCCAAGT
GTCAATATTGACTACGCAGCTGCAAGTAGTGATGCAGTAAAATTGCTTGCTAAAAATAACAAAAAAATCGCCTTTGTTTC
AGGTCCATTGGTTGATGACATCAATGGGAAAGTTCGTTTTTCTGGTTACAAAGAAGGACTCCAAGCGAATGGTTTAGAGT
TTAATGAAGGTCTTGTCTTTGAATCAAAATACAAATATGAAGAAGGCTATGTCTTGGCGGAACGTGTCTTGAATGCGGGA
GCAACTGCAGCATATATTGCTGAAGATGAAATCGCTTCCGGTTTGTTAAATGGTATTAGTGATCGTGGTATAAAGGTTCC
TGAAGAATTTGAAATCATTACAAGTGATGATTCACAGGTAACAAAATATACTCGTCCAAATCTGACGTCCATCAATCAAC
CGATTTACGATATCGGTGCAATTGCCATGCGTATGTTGACAAAAATTATGCACAAGGAAGAATTGGATAATCGCGAAGTT
ATCTTGAATCATGGTATCAAGGAACGTAAATCTACAAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

78.979

100

0.79

  ccpA Streptococcus pneumoniae D39

78.078

100

0.781

  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.006

99.399

0.577