Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   KQ224_RS03300 Genome accession   NZ_CP076721
Coordinates   652085..652888 (-) Length   267 a.a.
NCBI ID   WP_216807038.1    Uniprot ID   -
Organism   Streptococcus parasuis strain H35     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 647085..657888
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ224_RS03280 (KQ224_03280) - 647479..647859 (-) 381 WP_172025425.1 OsmC family protein -
  KQ224_RS03285 (KQ224_03285) - 647972..649018 (-) 1047 WP_216807035.1 D-alanine--D-alanine ligase -
  KQ224_RS03290 (KQ224_03290) recR 649127..649723 (-) 597 WP_216807036.1 recombination mediator RecR -
  KQ224_RS03295 (KQ224_03295) pbp2b 649732..651807 (-) 2076 WP_301553947.1 penicillin-binding protein PBP2B -
  KQ224_RS03300 (KQ224_03300) vicX 652085..652888 (-) 804 WP_216807038.1 MBL fold metallo-hydrolase Regulator
  KQ224_RS03305 (KQ224_03305) micB 652895..654244 (-) 1350 WP_174845893.1 cell wall metabolism sensor histidine kinase VicK Regulator
  KQ224_RS03310 (KQ224_03310) micA 654237..654941 (-) 705 WP_174845892.1 response regulator YycF Regulator
  KQ224_RS03315 (KQ224_03315) - 655141..655902 (+) 762 WP_024391259.1 amino acid ABC transporter ATP-binding protein -
  KQ224_RS03320 (KQ224_03320) - 655912..656751 (+) 840 WP_216807039.1 transporter substrate-binding domain-containing protein -
  KQ224_RS03325 (KQ224_03325) - 656768..657466 (+) 699 WP_216807040.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29609.60 Da        Isoelectric Point: 5.3289

>NTDB_id=577564 KQ224_RS03300 WP_216807038.1 652085..652888(-) (vicX) [Streptococcus parasuis strain H35]
MIGTGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLAEIDRKPDDIDAILVTHEHSDHIHGIGVLARKYGMD
IYANELTWLAMESKLGKIDVAQKHIFELGSMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIESNHDVEILRSGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTNKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGTDFQIYDTSPDTATVLTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=577564 KQ224_RS03300 WP_216807038.1 652085..652888(-) (vicX) [Streptococcus parasuis strain H35]
ATGATCGGAACAGGTTTTAATTATAGTATTTTAGCATCCGGGTCTAGTGGAAATTGTTTTTATTTGGAAACGGATAAAAA
GAAAATTTTAGTGGATGCAGGTTTATCGGGGAAAAAAATCACTAGTCTTTTGGCAGAAATTGACCGAAAACCAGATGATA
TTGATGCCATTTTAGTCACCCATGAACATAGCGATCATATCCATGGTATAGGAGTGTTAGCTCGTAAATATGGTATGGAT
ATTTATGCCAATGAATTGACCTGGCTGGCAATGGAAAGCAAGCTGGGCAAAATTGATGTCGCCCAAAAACACATTTTTGA
ATTGGGCTCAATGAAAACTTTTGGAGACCTGGATATTGAGTCATTTGGTGTCAGCCACGATGCTGCTTGTCCGCAGTTCT
ACCGCTTTATGAAAGATGATAAATCCTTTGTTATGTTGACGGATACTGGTTATGTTAGTGACCGAATGGTGGGTATTGTG
GAAAATGCAGATGCCTATTTGATTGAATCCAATCATGATGTTGAAATCCTTCGTTCGGGTTCTTATTCTTGGAATTTGAA
GCAACGGATTTTGTCGGATAAAGGGCATCTTTGTAACGAAGATGGTGCAGATGCCATGATTCGTTCGCTCGGAAATCGGA
CCAATAAGATTTACCTAGGGCATCTATCAAAGGAAAATAATATCAAGGAACTGGCACATATGACTATGGTTAACCAATTG
GCACAAGCTGATTTAGGTGTTGGTACAGATTTTCAAATTTATGATACTTCGCCAGATACGGCGACTGTATTGACCAAGAT
TTGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.779

100

0.768