Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   KRG72_RS07845 Genome accession   NZ_CP076703
Coordinates   1574973..1575479 (-) Length   168 a.a.
NCBI ID   WP_039696324.1    Uniprot ID   A0A091BVA5
Organism   Streptococcus equinus strain S1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1569973..1580479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRG72_RS07815 (KRG72_07825) - 1571464..1572408 (+) 945 WP_020917419.1 magnesium transporter CorA family protein -
  KRG72_RS07820 (KRG72_07830) - 1572644..1573300 (+) 657 WP_074602836.1 DUF1129 domain-containing protein -
  KRG72_RS07825 (KRG72_07835) - 1573345..1573791 (-) 447 WP_258250418.1 hypothetical protein -
  KRG72_RS07830 (KRG72_07840) - 1573775..1573999 (-) 225 WP_043895293.1 helix-turn-helix transcriptional regulator -
  KRG72_RS07835 (KRG72_07845) - 1574001..1574525 (-) 525 WP_258250419.1 heme biosynthesis HemY N-terminal domain-containing protein -
  KRG72_RS07840 (KRG72_07850) rpsR 1574673..1574912 (-) 240 WP_000068664.1 30S ribosomal protein S18 -
  KRG72_RS07845 (KRG72_07855) ssb 1574973..1575479 (-) 507 WP_039696324.1 single-stranded DNA-binding protein Machinery gene
  KRG72_RS07850 (KRG72_07860) rpsF 1575491..1575781 (-) 291 WP_006531977.1 30S ribosomal protein S6 -
  KRG72_RS07855 (KRG72_07865) - 1575987..1576133 (-) 147 WP_228380491.1 ATP-dependent protease -
  KRG72_RS07860 (KRG72_07870) - 1576324..1577226 (-) 903 WP_258254767.1 class C sortase -
  KRG72_RS07865 (KRG72_07875) - 1577359..1578738 (-) 1380 WP_258254769.1 SpaA isopeptide-forming pilin-related protein -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18559.17 Da        Isoelectric Point: 4.9008

>NTDB_id=577478 KRG72_RS07845 WP_039696324.1 1574973..1575479(-) (ssb) [Streptococcus equinus strain S1]
MINNVVLVGRMTRDAELRYTPSNQAVATFTLAVNRNFKNQNGEREADFINCVIWRQQAENLANWAKKGTLVGVTGRIQTR
NYENQQGQRVYVTEVVADNFQILESRATREGQSGGSYNGGFNNNSSFGGSSNGGFSSQSSQQTPNFGRDESPFGNSNPMD
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=577478 KRG72_RS07845 WP_039696324.1 1574973..1575479(-) (ssb) [Streptococcus equinus strain S1]
ATGATTAATAATGTAGTACTTGTCGGTCGCATGACCCGCGATGCAGAACTCCGTTACACACCATCTAATCAAGCAGTTGC
GACATTTACACTTGCTGTAAACCGTAACTTCAAGAATCAAAATGGTGAACGCGAAGCAGATTTTATTAACTGTGTTATTT
GGCGTCAGCAAGCTGAAAACTTGGCTAACTGGGCTAAAAAAGGCACATTGGTTGGTGTTACTGGTCGTATTCAGACTCGT
AACTATGAAAACCAACAAGGCCAACGTGTTTACGTAACTGAGGTCGTTGCAGATAATTTCCAAATCTTGGAAAGTCGTGC
TACACGTGAAGGTCAATCAGGTGGTTCTTACAACGGTGGATTTAACAACAATTCATCATTTGGTGGATCTTCTAATGGTG
GTTTCTCATCACAATCTTCACAACAAACACCTAACTTCGGTCGTGACGAAAGCCCATTTGGTAATTCAAACCCAATGGAT
ATTTCAGATGACGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A091BVA5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.765

100

0.625
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.659

100

0.625
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

63.095

0.369