Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   KRG72_RS05390 Genome accession   NZ_CP076703
Coordinates   1074658..1075098 (-) Length   146 a.a.
NCBI ID   WP_039696758.1    Uniprot ID   -
Organism   Streptococcus equinus strain S1     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1069658..1080098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KRG72_RS05370 (KRG72_05375) - 1069659..1070339 (-) 681 WP_074602153.1 response regulator transcription factor -
  KRG72_RS05375 (KRG72_05380) - 1070345..1070977 (-) 633 WP_258250157.1 GTP pyrophosphokinase family protein -
  KRG72_RS05380 (KRG72_05385) rcrQ 1071078..1072850 (-) 1773 WP_258250158.1 ABC transporter ATP-binding protein Regulator
  KRG72_RS05385 (KRG72_05390) rcrP 1072840..1074654 (-) 1815 WP_258250159.1 ABC transporter ATP-binding protein Regulator
  KRG72_RS05390 (KRG72_05395) rcrR 1074658..1075098 (-) 441 WP_039696758.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  KRG72_RS05395 (KRG72_05400) - 1075244..1075654 (-) 411 WP_074602165.1 peptide deformylase -
  KRG72_RS05400 (KRG72_05405) - 1075651..1076160 (-) 510 WP_258250160.1 GNAT family N-acetyltransferase -
  KRG72_RS05405 (KRG72_05410) gdhA 1076317..1077666 (-) 1350 WP_039696755.1 NADP-specific glutamate dehydrogenase -
  KRG72_RS05410 (KRG72_05415) - 1077902..1078399 (+) 498 WP_258250161.1 DUF308 domain-containing protein -
  KRG72_RS05415 (KRG72_05420) queF 1078436..1078927 (-) 492 WP_039696752.1 preQ(1) synthase -
  KRG72_RS05420 (KRG72_05425) queE 1079076..1079789 (-) 714 WP_258250162.1 7-carboxy-7-deazaguanine synthase QueE -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 17106.65 Da        Isoelectric Point: 8.4635

>NTDB_id=577467 KRG72_RS05390 WP_039696758.1 1074658..1075098(-) (rcrR) [Streptococcus equinus strain S1]
MRDKDPFSQFRYFINLMENRVHELGEQHGVENLAGPQGFAVLYLRENEDKEVFIKDIERKLKISKSVTSNLIKRMEKNGF
IEVVPSEVDKRYKRVVLTELGKAKSKDIDAFHVAIHKQIFDGISREELEISGRVFDRILKNLENKE

Nucleotide


Download         Length: 441 bp        

>NTDB_id=577467 KRG72_RS05390 WP_039696758.1 1074658..1075098(-) (rcrR) [Streptococcus equinus strain S1]
ATGCGAGACAAAGACCCCTTTTCACAATTTAGATACTTTATTAATTTGATGGAGAATCGGGTACATGAACTCGGTGAGCA
GCACGGTGTCGAAAATCTTGCTGGTCCGCAGGGCTTTGCAGTGCTTTATTTACGTGAAAATGAAGACAAGGAAGTTTTCA
TCAAAGATATTGAGCGTAAACTGAAGATTTCAAAATCTGTGACTAGTAATTTGATTAAACGAATGGAAAAAAATGGCTTT
ATTGAGGTTGTGCCTTCTGAGGTTGACAAGCGTTATAAGCGTGTGGTCTTAACAGAACTTGGTAAAGCAAAATCCAAAGA
CATCGATGCTTTTCATGTTGCCATTCATAAGCAAATTTTTGATGGTATTAGCCGTGAGGAACTAGAAATTTCTGGTCGTG
TCTTTGATCGCATTTTGAAAAACTTAGAAAACAAGGAGTAA

Domains

Predicted by InterproScan.

MarR family (MarR_2)

(35-91)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

53.846

97.945

0.527