Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   MQV61_RS06275 Genome accession   NZ_CP094339
Coordinates   1275999..1276736 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain W224N     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1270999..1281736
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MQV61_RS06245 yfiL 1271158..1271523 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  MQV61_RS06250 aroF 1271733..1272803 (+) 1071 WP_001168025.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  MQV61_RS06255 tyrA 1272814..1273935 (+) 1122 WP_000225230.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  MQV61_RS06260 pheA 1273978..1275138 (-) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  MQV61_RS06265 pheL 1275237..1275284 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  MQV61_RS06270 raiA 1275388..1275729 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  MQV61_RS06275 comL 1275999..1276736 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  MQV61_RS06280 rluD 1276871..1277851 (+) 981 WP_000079114.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  MQV61_RS06285 yfiH 1277848..1278579 (+) 732 WP_000040118.1 purine nucleoside phosphorylase YfiH -
  MQV61_RS06290 clpC 1278709..1281282 (+) 2574 WP_001350770.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=577429 MQV61_RS06275 WP_000197686.1 1275999..1276736(-) (comL) [Escherichia coli strain W224N]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=577429 MQV61_RS06275 WP_000197686.1 1275999..1276736(-) (comL) [Escherichia coli strain W224N]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376