Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   LUW75_RS19400 Genome accession   NZ_CP094264
Coordinates   4276639..4278783 (+) Length   714 a.a.
NCBI ID   WP_250336754.1    Uniprot ID   -
Organism   Streptomyces sp. MRC013     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4271639..4283783
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUW75_RS19380 (LUW75_19380) - 4272720..4273427 (+) 708 WP_250336752.1 chaplin -
  LUW75_RS19385 (LUW75_19385) - 4274212..4274845 (+) 634 Protein_3807 uridine kinase -
  LUW75_RS19390 (LUW75_19390) - 4274934..4275489 (-) 556 Protein_3808 methylated-DNA--[protein]-cysteine S-methyltransferase -
  LUW75_RS19395 (LUW75_19395) - 4275631..4276569 (+) 939 WP_250336753.1 MHYT domain-containing protein -
  LUW75_RS19400 (LUW75_19400) uvrB 4276639..4278783 (+) 2145 WP_250336754.1 excinuclease ABC subunit UvrB Machinery gene
  LUW75_RS19405 (LUW75_19405) - 4278975..4279552 (+) 578 Protein_3811 TerD family protein -
  LUW75_RS19410 (LUW75_19410) - 4279674..4281571 (+) 1898 Protein_3812 TerD family protein -
  LUW75_RS19415 (LUW75_19415) - 4281882..4282859 (+) 978 WP_250336755.1 TerC/Alx family metal homeostasis membrane protein -

Sequence

Protein


Download         Length: 714 a.a.        Molecular weight: 80244.78 Da        Isoelectric Point: 4.7416

>NTDB_id=577316 LUW75_RS19400 WP_250336754.1 4276639..4278783(+) (uvrB) [Streptomyces sp. MRC013]
MRPVTQIERSVAPFEVVSPYQPSGDQPTAIADLERRIRAGEKDVVLLGATGTGKSATTAWMIERLQRPTLVMAPNKTLAA
QLANEFRELLPNNAVEYFVSYYDYYQPEAYVPQSDTYIEKDSSINEEVERLRHSATNSLLTRRDVVVVASVSCIYGLGTP
QEYVDRMVSLEVGDEVDRDRLLRRFVDIQYTRNDLAFTRGTFRVRGDTIEIFPVYEELAVRIEMFGDEIEALSTLHPLTG
EVISEDRQLYVFPASHYVAGPERLERAVSGIERELELRLAELEGQGKLLEAQRLRMRTTYDIEMMRQIGSCSGIENYSMH
FDQREPGSPPNTLLDYFPEDFLLVVDESHVTVPQIGAMYEGDASRKRTLVDHGFRLPSALDNRPLKWEEFQERIGQAVYL
SATPGPYELSRSDGFVEQIIRPTGLVDPEIVVKPTEGQIDDLVHEIRLRTERDERVLVTTLTKKMAEDLTDYFLELGIQV
RYLHSDVDTLRRIELLRELRAGEYDVLVGINLLREGLDLPEVSLVAILDADKQGFLRSGTSLIQTIGRAARNVSGQVHMY
ADTITQAMAQAIDETNRRREKQVAYNEAHGIDPQPLRKKINDIVATIAREEVDTEQLLGTGYRKAKDGKGAKAPVPSLGK
AARDGAGSPRGEAARTGAVTGDRPAAELAGIIEEMTERMRAAAADLQFEVAARLRDEVSELKRELRQMKEAGIA

Nucleotide


Download         Length: 2145 bp        

>NTDB_id=577316 LUW75_RS19400 WP_250336754.1 4276639..4278783(+) (uvrB) [Streptomyces sp. MRC013]
ATGCGGCCCGTAACCCAGATCGAACGCTCGGTGGCGCCCTTCGAGGTCGTCAGCCCCTACCAGCCCAGCGGTGACCAGCC
CACGGCCATCGCCGACCTCGAACGGCGCATCCGCGCGGGCGAGAAGGACGTCGTCCTGCTCGGTGCGACCGGCACCGGCA
AGTCGGCGACCACGGCCTGGATGATCGAGCGGCTCCAGCGGCCCACGCTCGTCATGGCGCCGAACAAGACGCTGGCCGCG
CAGCTGGCGAACGAGTTCCGCGAGCTGCTGCCGAACAACGCCGTCGAGTACTTCGTCTCGTACTACGACTACTACCAGCC
CGAGGCGTACGTCCCGCAGTCGGACACGTACATCGAGAAGGACTCCTCGATCAACGAGGAGGTGGAGCGGCTGCGCCACT
CCGCGACGAACTCCCTGCTCACCCGGCGGGACGTGGTCGTCGTCGCCTCCGTCTCCTGCATCTACGGCCTGGGCACGCCC
CAGGAGTACGTCGACCGGATGGTCTCCCTCGAGGTCGGCGACGAGGTCGACCGGGACCGGCTGCTGCGCCGCTTCGTCGA
CATCCAGTACACGCGCAACGACCTCGCGTTCACCCGCGGCACGTTCCGGGTGCGCGGCGACACGATCGAGATCTTCCCCG
TGTACGAGGAACTCGCCGTCCGCATCGAGATGTTCGGCGACGAGATCGAGGCCCTCTCCACGCTGCACCCGCTCACCGGC
GAGGTCATCAGCGAGGACCGGCAGCTGTACGTCTTCCCCGCCAGCCACTACGTGGCGGGCCCCGAGCGCCTGGAGCGCGC
CGTCAGCGGCATCGAGCGCGAGCTGGAGCTGCGCCTCGCCGAGCTGGAGGGGCAGGGCAAGCTGCTGGAGGCCCAGCGGC
TGCGCATGCGCACCACGTACGACATCGAGATGATGCGCCAGATCGGCTCCTGCTCCGGCATCGAGAACTACTCCATGCAC
TTCGACCAGCGCGAGCCCGGCTCCCCGCCCAACACCCTCCTCGACTACTTCCCCGAGGACTTCCTGCTGGTCGTCGACGA
GTCCCACGTCACCGTGCCGCAGATCGGCGCCATGTACGAGGGCGACGCCTCCCGCAAGCGGACCCTCGTCGACCACGGGT
TCCGGCTGCCGTCCGCGCTGGACAACCGGCCGCTGAAGTGGGAGGAGTTCCAGGAGCGCATCGGCCAGGCCGTCTACCTG
TCGGCCACGCCCGGACCCTACGAGCTGTCCCGCTCCGACGGGTTCGTCGAGCAGATCATCCGCCCCACGGGCCTGGTCGA
CCCGGAGATCGTCGTCAAGCCCACCGAGGGGCAGATCGACGACCTGGTCCACGAGATCCGCCTCCGCACCGAGCGCGACG
AGCGCGTCCTGGTCACCACCCTCACCAAGAAGATGGCCGAGGACCTCACCGACTACTTCCTGGAGCTGGGCATCCAGGTC
CGCTACCTCCACAGCGACGTGGACACGCTGCGCCGGATCGAGCTGCTGCGCGAGCTGCGCGCCGGCGAGTACGACGTCCT
GGTCGGCATCAACCTCCTCCGGGAGGGCCTCGACCTGCCCGAGGTGTCCCTCGTGGCCATCCTCGACGCCGACAAGCAGG
GCTTCCTGCGCTCCGGGACGTCCCTCATCCAGACCATCGGCCGCGCCGCGCGCAACGTCTCGGGCCAGGTTCACATGTAC
GCCGACACGATCACCCAGGCCATGGCGCAGGCCATCGACGAGACCAACCGCCGCCGCGAGAAGCAGGTCGCCTACAACGA
GGCCCACGGCATCGACCCGCAACCGCTCCGCAAGAAGATCAACGACATCGTCGCCACCATCGCGCGCGAGGAGGTCGACA
CGGAGCAGCTGCTCGGCACCGGCTACCGCAAGGCGAAGGACGGCAAGGGCGCCAAGGCCCCGGTCCCGTCGCTGGGGAAG
GCCGCCCGGGACGGCGCCGGGAGCCCCCGGGGCGAGGCGGCCCGCACGGGCGCCGTCACCGGCGACCGCCCCGCCGCCGA
ACTGGCCGGGATCATCGAGGAGATGACCGAGCGGATGCGGGCCGCCGCCGCGGACCTCCAGTTCGAGGTCGCCGCCCGGC
TGCGCGACGAGGTGAGCGAACTGAAGAGGGAGCTGCGCCAGATGAAGGAGGCGGGCATCGCCTGA

Domains

Predicted by InterProScan.

Ultra-violet resistance protein B (UvrB)

(559-600)

UvrB/uvrC motif (UVR)

(672-703)

Helicase conserved C-terminal domain (Helicase_C)

(448-551)

Type III restriction enzyme, res subunit (ResIII)

(25-134)

UvrB interaction domain (UvrB_inter)

(168-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae TIGR4

56.277

97.059

0.546
  uvrB Streptococcus pneumoniae R6

56.277

97.059

0.546
  uvrB Streptococcus pneumoniae D39

56.277

97.059

0.546