Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   LUW75_RS17525 Genome accession   NZ_CP094264
Coordinates   3858469..3859530 (+) Length   353 a.a.
NCBI ID   WP_250336457.1    Uniprot ID   -
Organism   Streptomyces sp. MRC013     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3853469..3864530
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUW75_RS17510 (LUW75_17510) - 3853616..3854925 (+) 1310 Protein_3442 deoxyguanosinetriphosphate triphosphohydrolase -
  LUW75_RS17515 (LUW75_17515) - 3855046..3856377 (+) 1332 WP_250336455.1 FAD/NAD(P)-binding oxidoreductase -
  LUW75_RS17520 (LUW75_17520) dnaG 3856387..3858306 (+) 1920 WP_250336456.1 DNA primase -
  LUW75_RS17525 (LUW75_17525) rpoS 3858469..3859530 (+) 1062 WP_250336457.1 RNA polymerase sigma factor Regulator
  LUW75_RS17530 (LUW75_17530) rcrQ 3859886..3861817 (-) 1932 WP_250336458.1 ABC transporter ATP-binding protein Regulator
  LUW75_RS17535 (LUW75_17535) rcrP 3861817..3863550 (-) 1734 WP_250336459.1 ABC transporter ATP-binding protein Regulator

Sequence

Protein


Download         Length: 353 a.a.        Molecular weight: 39133.79 Da        Isoelectric Point: 6.7076

>NTDB_id=577311 LUW75_RS17525 WP_250336457.1 3858469..3859530(+) (rpoS) [Streptomyces sp. MRC013]
MQTRTLNDAAPVRDVPPDRPETLPETLAEGGPGPREPLAGPPAHPAADRTAAPSTDLLRQYLREIGRIPLLSAAEEVELA
RCVEAGLFAEEKLARTPDPDSRLALDLDTLVVRGRMAKRRLIEANLRLVVSVAKRYAGRGLTLLDLVQEGNLGLIRAVEK
FDHTRGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRAQRRILQEHGREPTADEVAAHLDLPPERIGEVL
RLAQEPVSLHAPVGGQDTALGDLIEDGDAASPVETAAFLLLREHLEAVLCTLGEREREVVQLRYGLVDGRPRTLEEIGRL
FGVTRERIRQIEAKSLGKLRDHAFAGQLRGYLD

Nucleotide


Download         Length: 1062 bp        

>NTDB_id=577311 LUW75_RS17525 WP_250336457.1 3858469..3859530(+) (rpoS) [Streptomyces sp. MRC013]
GTGCAGACCCGGACCCTGAACGACGCCGCCCCCGTGCGGGACGTCCCGCCGGACCGCCCCGAGACGCTCCCCGAGACCCT
CGCGGAGGGCGGGCCCGGCCCGCGGGAGCCGCTCGCCGGGCCGCCCGCGCACCCGGCCGCGGACCGGACCGCGGCGCCGT
CGACGGACCTGCTCCGGCAGTACCTCAGGGAGATCGGCCGCATCCCGCTCCTCAGCGCCGCCGAGGAGGTCGAGCTGGCC
CGATGCGTCGAGGCGGGGCTGTTCGCGGAGGAGAAACTCGCCCGCACCCCCGACCCGGACTCCCGGCTCGCGCTCGACCT
CGACACCCTCGTCGTGCGGGGGCGGATGGCCAAGCGCCGGCTCATCGAGGCGAACCTGCGGCTCGTCGTCTCCGTCGCCA
AGCGGTACGCCGGCCGCGGCCTGACCCTGCTGGACCTCGTCCAGGAGGGCAACCTCGGCCTGATCCGCGCCGTCGAGAAG
TTCGACCACACGCGCGGCTACAAGTTCTCCACGTACGCGACCTGGTGGATACGCCAGGCGATGTCCCGGGCCCTCGCCGA
CCAGGCCCGCACCATCCGGGTCCCCGTGCACGTCGTGGAGCTGATCAACCGCGTCGTACGGGCCCAGCGGCGGATCCTCC
AAGAACACGGGCGGGAGCCCACCGCCGACGAGGTCGCCGCCCACCTGGACCTGCCCCCCGAGCGGATCGGGGAGGTGCTG
CGGCTCGCCCAGGAGCCCGTCTCCCTGCACGCGCCGGTGGGCGGGCAGGACACGGCCCTGGGGGACCTCATCGAGGACGG
CGACGCCGCGTCCCCGGTGGAGACCGCCGCCTTCCTGCTGCTGCGCGAGCACCTGGAGGCGGTCCTGTGCACGCTCGGCG
AGCGCGAGCGCGAGGTCGTCCAGCTCCGCTACGGGCTGGTCGACGGGCGGCCCCGCACCCTGGAGGAGATCGGGCGCCTC
TTCGGCGTGACGCGCGAGCGCATCCGCCAGATCGAGGCCAAGAGCCTCGGCAAGCTGCGGGACCACGCGTTCGCCGGCCA
GCTGCGCGGCTACCTCGACTGA

Domains

Predicted by InterProScan.

Sigma-70 region 2 (Sigma70_r2)

(121-190)

Sigma-70 region 3 (Sigma70_r3)

(200-274)

Sigma-70, region 4 (Sigma70_r4)

(289-340)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(56-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

44.178

82.72

0.365