Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   LUW75_RS17535 Genome accession   NZ_CP094264
Coordinates   3861817..3863550 (-) Length   577 a.a.
NCBI ID   WP_250336459.1    Uniprot ID   -
Organism   Streptomyces sp. MRC013     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3856817..3868550
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUW75_RS17525 (LUW75_17525) rpoS 3858469..3859530 (+) 1062 WP_250336457.1 RNA polymerase sigma factor Regulator
  LUW75_RS17530 (LUW75_17530) rcrQ 3859886..3861817 (-) 1932 WP_250336458.1 ABC transporter ATP-binding protein Regulator
  LUW75_RS17535 (LUW75_17535) rcrP 3861817..3863550 (-) 1734 WP_250336459.1 ABC transporter ATP-binding protein Regulator
  LUW75_RS17540 (LUW75_17540) - 3863608..3865047 (-) 1440 WP_250336460.1 FGGY family carbohydrate kinase -
  LUW75_RS17545 (LUW75_17545) - 3865102..3865401 (-) 300 WP_250336461.1 YtxH domain-containing protein -
  LUW75_RS17565 (LUW75_17565) - 3866414..3866665 (+) 252 WP_250336462.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  LUW75_RS17570 (LUW75_17570) - 3866653..3867051 (+) 399 WP_250336463.1 PIN domain-containing protein -
  LUW75_RS17575 (LUW75_17575) - 3867414..3867725 (+) 312 WP_250336464.1 hypothetical protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62545.52 Da        Isoelectric Point: 8.8097

>NTDB_id=577313 LUW75_RS17535 WP_250336459.1 3861817..3863550(-) (rcrP) [Streptomyces sp. MRC013]
MLRRLLRTHLVPYKRAIALLVALQLLQTGATLYLPTLNADIIDKGVVTGDTGYILRYGALMTAVSLLQVAGNVGAVYYGA
RTASAVGRDVRAAVFDRVQSFSARELGHFGAPSLLTRTTNDVQQVQMLVLMAFTLMVSAPIMCVGGVVLALGQDVPLSAV
LLAVVPVLGVAVSLIVARMRPLFRTMQERLDTVNRVLREQITGNRVIRAFVRDAYERERFRGANTELTDVSTATGRLMAL
MFPTVMTVVNFSSVAVVWFGAHRIDDGAMRIGALTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIEEVLRTGTSVRP
PASPVRELPRGGRLEIRGADFRYPGAEEPVLRGVDLVAGPGEVTAVIGSTGSGKSTLLGLVPRLFDVTDGRVLVNGADVR
DLDPALIARTVGLVPQRPYLFSGTVATNLRYGRPDATDEELWRALETAQAADFVRELEGGLDAPVSQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYSTDARLRAALARETADATVVIVAQRVSTIRDADRIVVLDGGRVVGAGRHRELMADN
ETYREIVLSQLTEAEAV

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=577313 LUW75_RS17535 WP_250336459.1 3861817..3863550(-) (rcrP) [Streptomyces sp. MRC013]
GTGCTCAGACGACTACTCCGCACCCACCTGGTGCCGTACAAACGGGCCATAGCCCTCCTGGTGGCCCTCCAGCTCCTGCA
GACGGGCGCCACCCTCTACCTCCCGACACTCAACGCCGACATCATCGACAAGGGCGTCGTGACCGGCGACACCGGCTACA
TCCTGCGGTACGGCGCCCTGATGACCGCCGTGTCCCTGCTACAGGTCGCGGGGAACGTCGGCGCGGTCTACTACGGGGCC
CGGACGGCCTCGGCCGTGGGCCGGGACGTGCGGGCGGCCGTCTTCGACCGGGTCCAGTCGTTCTCCGCGCGGGAGCTGGG
GCACTTCGGGGCCCCGTCGCTGCTCACCCGCACCACCAACGATGTCCAGCAGGTGCAGATGCTGGTGCTGATGGCGTTCA
CGCTGATGGTGTCGGCGCCGATCATGTGCGTGGGCGGGGTGGTGCTGGCGCTGGGGCAGGACGTGCCGCTGTCCGCGGTG
CTGCTGGCCGTGGTGCCGGTGCTGGGCGTCGCCGTGTCGCTGATCGTGGCGCGGATGAGGCCGCTGTTCCGCACGATGCA
GGAGCGGCTCGACACGGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGCGTCATCCGGGCGTTCGTGCGGGACG
CGTACGAGCGGGAGCGGTTCCGGGGCGCGAACACGGAGCTGACCGACGTGTCGACGGCTACGGGGCGGCTGATGGCGCTG
ATGTTCCCGACCGTGATGACGGTGGTGAACTTCTCCAGCGTGGCCGTGGTCTGGTTCGGCGCGCACCGGATCGACGACGG
CGCGATGCGGATCGGCGCGCTGACGGCGTTCCTGGCGTACCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGGGCCGAGGTGTGCGCCGAGCGCATCGAGGAGGTGCTGCGCACGGGGACCAGCGTGCGGCCG
CCCGCGTCGCCGGTGCGGGAGCTGCCGCGCGGCGGGCGGCTGGAGATCCGCGGCGCCGACTTCCGCTACCCGGGCGCCGA
GGAGCCGGTGCTGCGCGGTGTCGACCTGGTGGCCGGGCCGGGCGAGGTCACGGCGGTCATCGGGTCGACGGGCAGCGGCA
AGTCCACGCTGCTGGGGCTCGTGCCGCGGCTGTTCGACGTGACGGACGGCCGGGTGCTGGTGAACGGCGCCGACGTGCGC
GACCTGGACCCAGCGCTGATCGCCCGGACGGTGGGGCTCGTGCCGCAGCGGCCGTACCTCTTCTCGGGGACGGTCGCGAC
GAACCTCCGGTACGGGCGGCCGGACGCGACCGACGAGGAGCTGTGGCGGGCCCTGGAGACGGCCCAGGCCGCCGACTTCG
TGCGGGAGCTGGAGGGCGGGCTGGACGCGCCGGTCTCCCAGGGCGGCACCAACGTGTCCGGCGGCCAGCGGCAGCGGCTG
GCGATCGCCCGGACGCTGGTGCAGCGGCCGGAGATCTACCTCTTCGACGACTCGTTCTCGGCACTGGACTACAGCACCGA
CGCCCGGTTGCGGGCGGCGCTGGCGCGCGAGACCGCGGACGCGACCGTGGTGATCGTCGCGCAGCGGGTGTCGACGATCA
GGGACGCCGACCGGATCGTGGTCCTCGACGGGGGCCGGGTCGTGGGCGCGGGGCGGCACCGCGAGCTGATGGCGGACAAC
GAGACGTACCGGGAGATCGTGCTCTCCCAGCTGACCGAGGCGGAGGCTGTCTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(19-288)

ABC transporter (ABC_tran)

(352-498)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.385

99.133

0.4