Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   LUW75_RS17530 Genome accession   NZ_CP094264
Coordinates   3859886..3861817 (-) Length   643 a.a.
NCBI ID   WP_250336458.1    Uniprot ID   -
Organism   Streptomyces sp. MRC013     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3854886..3866817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LUW75_RS17515 (LUW75_17515) - 3855046..3856377 (+) 1332 WP_250336455.1 FAD/NAD(P)-binding oxidoreductase -
  LUW75_RS17520 (LUW75_17520) dnaG 3856387..3858306 (+) 1920 WP_250336456.1 DNA primase -
  LUW75_RS17525 (LUW75_17525) rpoS 3858469..3859530 (+) 1062 WP_250336457.1 RNA polymerase sigma factor Regulator
  LUW75_RS17530 (LUW75_17530) rcrQ 3859886..3861817 (-) 1932 WP_250336458.1 ABC transporter ATP-binding protein Regulator
  LUW75_RS17535 (LUW75_17535) rcrP 3861817..3863550 (-) 1734 WP_250336459.1 ABC transporter ATP-binding protein Regulator
  LUW75_RS17540 (LUW75_17540) - 3863608..3865047 (-) 1440 WP_250336460.1 FGGY family carbohydrate kinase -
  LUW75_RS17545 (LUW75_17545) - 3865102..3865401 (-) 300 WP_250336461.1 YtxH domain-containing protein -
  LUW75_RS17565 (LUW75_17565) - 3866414..3866665 (+) 252 WP_250336462.1 type II toxin-antitoxin system Phd/YefM family antitoxin -

Sequence

Protein


Download         Length: 643 a.a.        Molecular weight: 69101.19 Da        Isoelectric Point: 5.0176

>NTDB_id=577312 LUW75_RS17530 WP_250336458.1 3859886..3861817(-) (rcrQ) [Streptomyces sp. MRC013]
MAGPGGMMRPGGGPGDRSADFGGSLRRLLRQLSRERAALWAMVATGVLSVALSVVGPKILGRATDLVFSGVVGRGMEEGR
TKGEVVAALREEGDEGLADMLSGVDFTPGRGIDFDAVGDVLLLALAVYTAAGLLMLVSTRMSIRVINRTVYRLREDVQAK
LERLPLSYFDRAQRGEVLSRATNDVDNIGQTLQQSMGQLINSVLTVLGVLAMMFWISPLLALVALVTVPVAVAVAARVGK
RSQPQFVRQWKATGGLNAHVEEAYSGHALVKVFGRQEEASREFRARNDELYEAGFRAQFTSGVMQPLMFFVSNLNYVLVA
VVGGLRVASGALSIGDVQAFIQYSRQFSMPLTQIASMANLMQSGVASAERVFELLDAEEQPESPALERPAEVRGAVALEK
VSFRYEPGRPLIEDLSLTVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIVLDGVDVARMSREELRSSIGMVLQDTW
LFGGTIAENIAYGAAAGREVTRGEIEAAARAAHADRFVRTLPDGYDTVVDEEGGGVSAGEKQLITIARAFLSDPAVLILD
EATSSVDTRTEVLIQKAMARLAHGRTTFVIAHRLSTIRDADVILVMENGSLVEQGTHDELLEARGAYARLYAAQFAEAVV
EVD

Nucleotide


Download         Length: 1932 bp        

>NTDB_id=577312 LUW75_RS17530 WP_250336458.1 3859886..3861817(-) (rcrQ) [Streptomyces sp. MRC013]
ATGGCCGGTCCTGGCGGGATGATGCGGCCCGGCGGCGGTCCGGGCGACCGGTCCGCGGACTTCGGGGGTTCGCTCCGGCG
GCTGCTGCGGCAGCTCTCCCGGGAGAGGGCCGCGCTGTGGGCGATGGTCGCGACCGGTGTGCTCAGCGTGGCGCTGTCGG
TGGTCGGGCCGAAGATCCTCGGCCGTGCGACGGACCTGGTGTTCTCGGGGGTCGTCGGCCGCGGCATGGAGGAGGGCCGT
ACGAAGGGCGAGGTCGTCGCGGCCCTGCGGGAGGAGGGCGACGAGGGGCTCGCGGACATGCTGTCCGGCGTGGACTTCAC
GCCCGGCCGGGGCATCGACTTCGACGCGGTCGGGGACGTGCTGCTGCTCGCCCTGGCCGTGTACACGGCCGCCGGGCTGC
TGATGCTCGTGTCGACCCGCATGTCGATCAGGGTGATCAACCGGACGGTCTACCGGCTGCGCGAAGACGTGCAGGCGAAG
CTGGAGCGGCTGCCGCTGTCGTACTTCGACCGGGCGCAGCGCGGCGAGGTGCTGAGCCGGGCGACGAACGACGTCGACAA
CATCGGCCAGACCCTGCAGCAGTCCATGGGCCAGCTGATCAACTCGGTGCTCACGGTCCTGGGCGTCCTGGCGATGATGT
TCTGGATCTCGCCGCTGCTGGCGCTGGTCGCGTTGGTGACCGTGCCCGTGGCGGTGGCGGTGGCGGCGCGGGTCGGCAAG
CGGTCGCAGCCGCAGTTCGTCCGGCAGTGGAAGGCCACGGGCGGGCTGAACGCGCACGTCGAGGAGGCGTACTCGGGCCA
CGCGCTGGTGAAGGTGTTCGGCCGGCAGGAGGAGGCCTCGCGGGAGTTCCGCGCGCGGAACGACGAGCTGTACGAGGCCG
GGTTCCGGGCGCAGTTCACCAGCGGGGTCATGCAGCCGCTGATGTTCTTCGTGTCGAACCTGAACTACGTCCTGGTGGCG
GTCGTCGGCGGGCTGCGGGTGGCGTCCGGGGCGCTGTCGATCGGCGACGTGCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGATCGCGTCGATGGCGAACCTGATGCAGTCCGGCGTGGCGTCCGCCGAGCGGGTCTTCGAGC
TGCTGGACGCCGAGGAGCAGCCGGAGTCGCCGGCGCTGGAGCGGCCCGCCGAGGTCCGCGGCGCGGTGGCCCTGGAGAAG
GTGTCGTTCCGCTACGAGCCCGGCAGGCCGCTCATCGAGGACCTGTCGCTGACGGTGGAGCCCGGCCAGACGGTCGCGAT
CGTCGGGCCGACGGGGGCCGGCAAGACCACGCTGGTCAACCTGCTGATGCGGTTCTACGAGGTGACGGGCGGCCGGATCG
TCCTGGACGGCGTGGACGTGGCCCGGATGTCGCGGGAGGAGCTGCGCTCGTCGATCGGCATGGTCCTGCAGGACACCTGG
CTGTTCGGCGGGACGATCGCGGAGAACATCGCGTACGGCGCCGCCGCCGGCCGCGAGGTGACGCGCGGGGAGATCGAGGC
GGCGGCGCGGGCCGCGCACGCCGACCGGTTCGTCCGCACCCTGCCGGACGGGTACGACACGGTCGTCGACGAGGAGGGCG
GCGGTGTCAGCGCGGGTGAGAAGCAGCTGATCACGATCGCCCGCGCGTTCCTGTCGGACCCGGCGGTCCTGATCCTCGAC
GAGGCGACGAGCTCGGTCGACACCCGTACGGAGGTGCTGATCCAGAAGGCGATGGCACGCCTCGCCCACGGGCGGACGAC
GTTCGTCATCGCGCACCGGTTGTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGAACGGCTCCCTCGTCGAGC
AGGGCACGCACGACGAGCTGCTGGAGGCGCGGGGCGCGTACGCGCGCCTGTACGCGGCGCAGTTCGCCGAGGCGGTGGTC
GAGGTCGACTGA

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(42-351)

ABC transporter (ABC_tran)

(413-564)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

39.903

96.267

0.384