Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KQP88_RS20660 Genome accession   NZ_CP076668
Coordinates   4935901..4937241 (+) Length   446 a.a.
NCBI ID   WP_216704057.1    Uniprot ID   -
Organism   Pseudomonas lijiangensis strain LJ2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4930901..4942241
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQP88_RS20635 (KQP88_20635) pgeF 4930981..4931709 (-) 729 WP_216704056.1 peptidoglycan editing factor PgeF -
  KQP88_RS20640 (KQP88_20640) rluD 4931706..4932668 (-) 963 WP_025261857.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KQP88_RS20645 (KQP88_20645) - 4932818..4933840 (+) 1023 WP_025261858.1 outer membrane protein assembly factor BamD -
  KQP88_RS20650 (KQP88_20650) - 4934077..4934316 (+) 240 WP_260406260.1 PP0621 family protein -
  KQP88_RS20655 (KQP88_20655) pilS 4934306..4935898 (+) 1593 WP_200994675.1 PAS domain-containing sensor histidine kinase Regulator
  KQP88_RS20660 (KQP88_20660) pilR 4935901..4937241 (+) 1341 WP_216704057.1 sigma-54 dependent transcriptional regulator Regulator
  KQP88_RS20665 (KQP88_20665) thiO 4937238..4938377 (-) 1140 WP_216704058.1 glycine oxidase ThiO -
  KQP88_RS20670 (KQP88_20670) - 4938405..4938803 (-) 399 WP_200994678.1 type IV pilin protein -
  KQP88_RS20675 (KQP88_20675) - 4938816..4941989 (-) 3174 WP_216706010.1 pilus assembly protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50246.35 Da        Isoelectric Point: 6.5804

>NTDB_id=577156 KQP88_RS20660 WP_216704057.1 4935901..4937241(+) (pilR) [Pseudomonas lijiangensis strain LJ2]
MTQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVTEAREWLAREPFDMCLTDMRLPDGNGLELVQHIQQAYPQTPVA
MITAHGSLDMAIHALKAGAFDFLTKPVDLSRLRELVSSALRLQPGAPAERSIDSRLLGNSPPMRALRKQIDKLARSQAPI
YISGESGSGKELVARLIHEQGPRNDKPFVPVNCGAIPSELMESEFFGHRKGSFTGAHEDKPGLFQAANNGTLFLDEVADL
PLAMQVKLLRAIQEKSIRSVGGQQEQVVDVRILCATHKDLNAEVAAGRFRQDLYYRLNVIELRVPPLRERREDIDQLVSS
VLQRLAANCGQASARLHPQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAESGTPQEHDGHNLADIDNLE
DYLESIERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=577156 KQP88_RS20660 WP_216704057.1 4935901..4937241(+) (pilR) [Pseudomonas lijiangensis strain LJ2]
ATGACCCAACGGCAAAAGATCCTGATAGTCGATGATGAGCCGGACATTCGTGAACTCCTGGAGATCACCCTCGGCCGCAT
GAAACTCGACACCCGCAGCGCCCGCAATGTGACCGAGGCCCGCGAGTGGCTGGCTCGCGAGCCATTCGACATGTGCCTGA
CCGACATGCGCCTGCCTGACGGTAATGGCCTGGAGCTGGTGCAGCATATTCAGCAGGCTTACCCACAGACGCCCGTGGCG
ATGATCACCGCCCATGGCAGCCTGGATATGGCCATTCATGCACTCAAGGCCGGTGCCTTCGACTTCCTGACCAAGCCGGT
GGACCTGAGCAGGCTGCGTGAACTGGTCAGCAGCGCCCTGCGCCTGCAACCCGGCGCCCCGGCAGAACGCAGCATCGACA
GTCGTCTGCTGGGTAACTCCCCACCGATGCGTGCCCTGCGCAAGCAAATCGACAAACTGGCGCGCAGCCAGGCGCCGATC
TATATCAGTGGCGAATCGGGTAGCGGCAAGGAACTGGTCGCCCGGCTGATTCATGAACAAGGACCGCGTAACGACAAACC
TTTCGTGCCGGTCAACTGCGGGGCGATTCCTTCGGAATTGATGGAAAGCGAATTCTTCGGCCATCGCAAAGGCAGCTTTA
CCGGCGCCCATGAAGACAAGCCAGGCCTGTTTCAGGCCGCCAATAACGGCACGCTGTTTCTGGATGAAGTCGCTGACTTG
CCGCTGGCCATGCAGGTAAAACTGCTGCGGGCCATCCAGGAGAAATCCATACGCAGCGTCGGCGGTCAGCAGGAGCAGGT
CGTGGATGTGCGAATTCTATGTGCCACCCACAAGGATCTGAACGCCGAAGTCGCTGCCGGCCGCTTCCGGCAGGATTTGT
ATTACCGCCTGAACGTTATCGAGCTGCGGGTACCGCCGCTGCGTGAGCGGCGCGAAGATATCGATCAACTGGTAAGCAGT
GTCCTGCAACGTCTGGCCGCCAACTGCGGCCAGGCCTCGGCACGCCTGCACCCTCAGGCGCTGGAAACCCTGAAAAGCTA
CCGCTTCCCCGGCAACGTTCGCGAACTGGAAAACATGCTGGAGCGTGCTTACACCCTTTGCGAAAACGATGAAATCCACG
CCTCGGACCTTCGCCTTGCCGAGTCCGGCACCCCCCAGGAACACGACGGCCACAATCTGGCCGATATCGATAATCTGGAG
GATTACCTGGAAAGCATCGAGCGCAAACTGATCCTGCAAGCTCTGGAGGAAACCCGCTGGAACCGGACCGCAGCAGCGCA
ACGCCTGAGCCTGTCATTCAGATCGATGCGTTACCGGTTGAAGAAGCTGGGGTTGGATTAG

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-302)

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

80.135

99.327

0.796
  pilR Acinetobacter baumannii strain A118

48.491

100

0.504