Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   KQP88_RS20655 Genome accession   NZ_CP076668
Coordinates   4934306..4935898 (+) Length   530 a.a.
NCBI ID   WP_200994675.1    Uniprot ID   -
Organism   Pseudomonas lijiangensis strain LJ2     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4929306..4940898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQP88_RS20635 (KQP88_20635) pgeF 4930981..4931709 (-) 729 WP_216704056.1 peptidoglycan editing factor PgeF -
  KQP88_RS20640 (KQP88_20640) rluD 4931706..4932668 (-) 963 WP_025261857.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  KQP88_RS20645 (KQP88_20645) - 4932818..4933840 (+) 1023 WP_025261858.1 outer membrane protein assembly factor BamD -
  KQP88_RS20650 (KQP88_20650) - 4934077..4934316 (+) 240 WP_260406260.1 PP0621 family protein -
  KQP88_RS20655 (KQP88_20655) pilS 4934306..4935898 (+) 1593 WP_200994675.1 PAS domain-containing sensor histidine kinase Regulator
  KQP88_RS20660 (KQP88_20660) pilR 4935901..4937241 (+) 1341 WP_216704057.1 sigma-54 dependent transcriptional regulator Regulator
  KQP88_RS20665 (KQP88_20665) thiO 4937238..4938377 (-) 1140 WP_216704058.1 glycine oxidase ThiO -
  KQP88_RS20670 (KQP88_20670) - 4938405..4938803 (-) 399 WP_200994678.1 type IV pilin protein -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58542.59 Da        Isoelectric Point: 6.7381

>NTDB_id=577155 KQP88_RS20655 WP_200994675.1 4934306..4935898(+) (pilS) [Pseudomonas lijiangensis strain LJ2]
MTAETLSLGSPQAQRILRLYHLYRLTIGIVLVLLISSDLDTELLQLANLNLFRAGCWLYLVFNILVVVLLERPRHKVQLF
SLAVTDAVMLSGLFYAAGGTSSGIGNLLIASVAISNVLLRGRLGLLIAAVSAIGIIYLTFYISFISPVASNDYVQASTLG
ALCFAAALLVQALTARMQVSEVLAEQRAADVDQLEELNGLILQRMRTGILVLDSRRQVLLANQGALSLLGHEQLVGQVID
QYSPQLVDRLRQWLINPIMAPRSISTSAIGPILQPSFAALNRGDQRQTLIFLEDLSQVAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSAPDRRLGQIIHDQSRRINVVIENVLQLSRRRETEPELLDLKTWLENFVAGFRSSAPAN
QNVHTEIGQGMLTTRMDPEQLNQVLSNLLQNGLRYSGKHHEMAQVWLRLFHNQENDLPTLEVLDNGPGVSEQHLAKLFEP
FFTTESKGTGLGLYLSRELCESNQAHLDYTLRPEGGSCMRITFAHPFKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=577155 KQP88_RS20655 WP_200994675.1 4934306..4935898(+) (pilS) [Pseudomonas lijiangensis strain LJ2]
GTGACCGCTGAGACGCTTTCACTCGGCAGCCCACAAGCGCAACGGATCCTGCGGCTGTATCACCTGTATCGACTGACCAT
CGGCATTGTGCTGGTGCTGTTGATCTCCAGCGACCTGGACACCGAACTGCTGCAACTGGCCAACCTGAACCTGTTTCGGG
CTGGCTGCTGGCTGTATCTGGTGTTCAACATTCTGGTTGTGGTGCTGCTTGAGCGTCCCCGCCATAAAGTCCAACTCTTC
AGCCTGGCAGTGACCGATGCGGTGATGCTGTCAGGACTGTTCTATGCAGCGGGCGGCACCTCAAGTGGCATCGGTAACCT
GCTGATTGCCTCGGTCGCCATCAGCAATGTTCTGCTGCGAGGCCGCCTCGGGCTGTTGATTGCCGCTGTCTCTGCCATCG
GCATCATTTACCTGACGTTCTACATCAGCTTCATCAGCCCGGTTGCCTCCAATGACTATGTGCAGGCCAGCACGCTGGGG
GCTCTGTGCTTTGCCGCTGCCCTGCTGGTACAGGCACTGACCGCCCGCATGCAAGTGAGCGAAGTGCTGGCCGAACAGCG
TGCCGCCGATGTCGACCAGCTCGAAGAGCTCAATGGCCTGATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTCGACT
CGCGCCGTCAGGTGCTGCTGGCCAATCAGGGCGCCTTGAGCCTGCTGGGCCATGAGCAACTGGTCGGTCAGGTCATCGAT
CAATACTCGCCACAACTGGTGGATCGCCTGCGGCAATGGCTGATCAACCCCATCATGGCACCGCGCAGCATATCGACCTC
AGCCATCGGCCCGATCCTGCAACCGAGCTTTGCCGCACTCAACCGCGGCGACCAGCGCCAGACGCTGATCTTTCTGGAAG
ACCTCTCGCAGGTTGCCCATCAGGCCCAGCAACTGAAGCTTGCAGCACTGGGTCGCCTGACAGCCGGAATCGCCCATGAG
ATCCGCAACCCGCTGGGCGCTGTCAGCCATGCGGCGCAACTGCTCAATGAATCGGAAGAGCTGTCAGCACCGGACCGGCG
ACTCGGGCAGATCATTCATGATCAGTCGCGACGCATCAATGTGGTGATCGAGAACGTCCTGCAATTGTCGAGGCGCCGCG
AAACCGAGCCCGAACTGCTGGACCTGAAAACCTGGCTGGAGAACTTCGTTGCAGGCTTTCGCAGCTCGGCACCAGCCAAC
CAGAATGTGCATACCGAGATCGGCCAGGGCATGCTCACCACGCGCATGGACCCGGAGCAATTGAACCAAGTGCTGAGCAA
CCTGCTGCAGAACGGGCTACGGTACAGCGGTAAACACCATGAAATGGCGCAGGTCTGGCTGAGGCTGTTCCACAACCAGG
AAAACGACCTGCCCACCCTGGAAGTGCTCGATAACGGGCCAGGCGTATCCGAACAGCATCTGGCCAAACTCTTCGAGCCG
TTTTTCACCACAGAAAGCAAAGGTACCGGCCTTGGCCTCTACCTTTCCCGGGAACTGTGCGAAAGCAACCAGGCGCATCT
GGATTACACCCTTCGCCCCGAAGGCGGTAGCTGCATGCGCATCACTTTCGCTCACCCGTTCAAGTTGAGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

62.642

100

0.626