Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KQP88_RS16580 Genome accession   NZ_CP076668
Coordinates   4014038..4016254 (-) Length   738 a.a.
NCBI ID   WP_216703644.1    Uniprot ID   -
Organism   Pseudomonas lijiangensis strain LJ2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4009038..4021254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQP88_RS16550 (KQP88_16550) murB 4009841..4010860 (-) 1020 WP_216703641.1 UDP-N-acetylmuramate dehydrogenase -
  KQP88_RS16555 (KQP88_16555) kdsB 4010895..4011659 (-) 765 WP_216703642.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KQP88_RS16560 (KQP88_16560) - 4011656..4011841 (-) 186 WP_025261020.1 Trm112 family protein -
  KQP88_RS16565 (KQP88_16565) lpxK 4011859..4012854 (-) 996 WP_216703643.1 tetraacyldisaccharide 4'-kinase -
  KQP88_RS16570 (KQP88_16570) - 4012854..4013285 (-) 432 WP_025261022.1 biopolymer transporter ExbD -
  KQP88_RS16575 (KQP88_16575) exbB 4013282..4013956 (-) 675 WP_025261023.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KQP88_RS16580 (KQP88_16580) comA 4014038..4016254 (-) 2217 WP_216703644.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KQP88_RS16585 (KQP88_16585) - 4016521..4017309 (-) 789 WP_025261025.1 ABC transporter permease -
  KQP88_RS16590 (KQP88_16590) - 4017306..4018238 (-) 933 WP_025261026.1 ABC transporter ATP-binding protein -
  KQP88_RS16595 (KQP88_16595) - 4018402..4019025 (-) 624 WP_216703645.1 glutathione S-transferase family protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80749.47 Da        Isoelectric Point: 10.0134

>NTDB_id=577150 KQP88_RS16580 WP_216703644.1 4014038..4016254(-) (comA) [Pseudomonas lijiangensis strain LJ2]
MRTGMIALALGLLALRFLPVLPPVWLLLLMPVLALMLLPFRTYPLALFLFGLTWACVSAKSALDDRLLPRLDGQTLWLQG
KVVGLPGAAEGVVRFELEDATSRRARLPQLMRVAWYGGPEVRSGERWKLAVKLKRPAGLVNPDAFDYQAWLLAQRIGATG
TVVDGQLLTPARAAWRDGIRQRLLAVEAHGREGGLAALVLGDGSGLSTSDWQVLQDTGTVHLLVISGQHIGLLAGVVYLL
IAGLARRGLWPRFLPWLPWACGLAFGAALGYGLLAGFDVPVRRACVMVAMVLLWRLRFRHLGLLLPLLMSLNLVLIFEPL
VSLQPGFWLSFSAVAILILIFGGRLGAWGWWQSWTRAQWLIAIGLLPMLLALNLPVSISGPLANLLAVPWVSLIVLPPAL
LGTLLLPVPVIGEGLLWLAGAALEGLFVVLGWIADVRPAWLPSTVPVWAWAMSLLGALLLLMPQGMPMRLLGWPLLLLCV
FPPLKSVPHGQVEVLQLDVGQGLAILLRTRHHTLLYDAGPRFGEFDIGQRVVLPAIRKAGVRKLDLMLLSHADADHAGGA
LAVHGALPVLRVLGGELARLDPRLDAQLCRNDETWEWDGVRFATWRWEQAEEGNQSSCLLSVEAMGERLLLTGDIDVEAE
QAAINSGFDLRAHWLQAPHHGSRTSSSKLFLRAVAPVGVLISRGRNNAFGHPHPLVMARYRWHGIKSYDSAELGAVGLQL
GTFGQPRAERGEQRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=577150 KQP88_RS16580 WP_216703644.1 4014038..4016254(-) (comA) [Pseudomonas lijiangensis strain LJ2]
ATGCGCACAGGGATGATCGCGCTTGCTCTGGGTCTGTTGGCCCTGCGTTTTTTGCCCGTGTTGCCTCCGGTATGGCTATT
GCTGCTGATGCCGGTGTTGGCGTTGATGCTGTTGCCGTTTCGCACTTATCCATTGGCACTTTTTCTGTTTGGACTCACCT
GGGCCTGCGTGTCGGCAAAGTCGGCGCTGGACGATCGTCTGTTGCCGCGCCTCGACGGGCAGACCTTGTGGCTGCAAGGC
AAGGTGGTCGGTTTGCCAGGTGCTGCCGAGGGCGTGGTGCGTTTCGAGCTGGAGGATGCAACATCACGGCGGGCCAGGTT
GCCGCAACTGATGCGTGTGGCCTGGTATGGCGGTCCCGAAGTGCGCAGCGGCGAGCGCTGGAAGTTGGCGGTCAAGCTCA
AGCGTCCTGCCGGGCTGGTCAATCCCGATGCGTTCGATTATCAGGCCTGGTTGCTGGCCCAGCGCATTGGCGCTACCGGC
ACGGTGGTGGACGGGCAGTTGCTGACACCCGCACGCGCTGCATGGCGTGACGGGATTCGGCAACGCTTGCTGGCGGTCGA
AGCCCATGGTCGTGAAGGCGGGCTGGCGGCGCTGGTGCTGGGCGACGGTTCGGGCTTGTCGACTTCCGACTGGCAGGTGC
TGCAGGACACCGGCACCGTGCATCTTCTAGTGATATCCGGCCAGCATATCGGCCTGTTGGCCGGTGTGGTCTATCTGCTG
ATCGCGGGGCTGGCTCGCCGGGGATTATGGCCGCGCTTTCTGCCCTGGCTGCCGTGGGCCTGCGGTCTGGCATTCGGGGC
TGCGCTGGGGTATGGCCTGCTGGCCGGGTTCGATGTGCCGGTGCGTCGGGCCTGTGTGATGGTCGCGATGGTGCTGCTCT
GGCGTTTGCGCTTTCGGCATCTCGGGCTGCTCTTGCCACTGTTGATGTCGCTCAATCTGGTCCTGATCTTCGAGCCTCTG
GTCAGTTTGCAGCCGGGCTTCTGGCTGTCGTTCTCGGCGGTGGCGATTCTGATCCTGATCTTCGGCGGGCGTCTCGGTGC
CTGGGGTTGGTGGCAGAGCTGGACGCGGGCTCAATGGTTGATCGCCATTGGTCTTCTGCCGATGCTGCTGGCCTTGAATC
TGCCGGTCAGCATCAGTGGCCCGCTGGCCAATCTGCTGGCGGTGCCCTGGGTCAGCCTGATCGTATTGCCTCCCGCATTG
CTCGGGACGCTGCTGTTGCCCGTCCCAGTGATTGGCGAAGGCCTGCTCTGGCTGGCCGGTGCTGCGCTGGAAGGCTTGTT
CGTTGTTCTGGGCTGGATTGCCGATGTCCGGCCTGCCTGGCTGCCAAGCACAGTGCCAGTCTGGGCCTGGGCCATGAGCC
TCTTGGGCGCTCTGCTGTTATTAATGCCCCAGGGCATGCCCATGCGTCTGTTGGGTTGGCCACTGTTATTGCTGTGCGTT
TTCCCGCCGCTCAAATCGGTGCCCCACGGGCAGGTCGAGGTGCTTCAACTGGATGTCGGGCAAGGGCTGGCGATTCTCTT
GCGCACCCGCCATCACACGCTGCTGTATGACGCCGGGCCGCGTTTCGGGGAGTTCGATATCGGTCAGCGAGTGGTGCTGC
CTGCGATTCGCAAAGCCGGCGTGCGCAAGCTGGACCTGATGCTGCTCAGCCATGCCGACGCCGATCATGCCGGCGGTGCG
CTGGCTGTTCATGGTGCACTGCCGGTTCTTCGGGTCCTGGGTGGTGAGCTGGCAAGGCTTGATCCCCGACTTGATGCTCA
ACTGTGTCGCAACGATGAAACCTGGGAATGGGATGGTGTGCGTTTTGCGACCTGGCGCTGGGAGCAGGCCGAGGAGGGCA
ATCAGTCGTCCTGCCTGCTGAGTGTCGAGGCCATGGGTGAGCGATTGCTGCTGACCGGCGATATCGATGTTGAGGCCGAG
CAGGCTGCGATTAACAGCGGTTTCGATCTGCGTGCTCACTGGTTGCAGGCGCCCCATCATGGCAGCCGGACCTCTTCTTC
CAAGCTGTTTCTGCGTGCCGTGGCCCCGGTGGGCGTGCTGATTTCCCGTGGACGCAACAATGCCTTCGGGCATCCTCATC
CTCTGGTGATGGCGCGTTATCGATGGCACGGGATAAAGAGCTACGACAGTGCCGAGCTGGGTGCTGTCGGGCTGCAACTG
GGGACTTTCGGCCAACCCCGGGCAGAGCGGGGCGAGCAGCGCTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-166)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-676)

Competence protein (Competence)

(198-463)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.989

97.019

0.611
  comA Ralstonia pseudosolanacearum GMI1000

32.93

100

0.369