Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KQP88_RS16575 Genome accession   NZ_CP076668
Coordinates   4013282..4013956 (-) Length   224 a.a.
NCBI ID   WP_025261023.1    Uniprot ID   -
Organism   Pseudomonas lijiangensis strain LJ2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4008282..4018956
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQP88_RS16550 (KQP88_16550) murB 4009841..4010860 (-) 1020 WP_216703641.1 UDP-N-acetylmuramate dehydrogenase -
  KQP88_RS16555 (KQP88_16555) kdsB 4010895..4011659 (-) 765 WP_216703642.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KQP88_RS16560 (KQP88_16560) - 4011656..4011841 (-) 186 WP_025261020.1 Trm112 family protein -
  KQP88_RS16565 (KQP88_16565) lpxK 4011859..4012854 (-) 996 WP_216703643.1 tetraacyldisaccharide 4'-kinase -
  KQP88_RS16570 (KQP88_16570) - 4012854..4013285 (-) 432 WP_025261022.1 biopolymer transporter ExbD -
  KQP88_RS16575 (KQP88_16575) exbB 4013282..4013956 (-) 675 WP_025261023.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KQP88_RS16580 (KQP88_16580) comA 4014038..4016254 (-) 2217 WP_216703644.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KQP88_RS16585 (KQP88_16585) - 4016521..4017309 (-) 789 WP_025261025.1 ABC transporter permease -
  KQP88_RS16590 (KQP88_16590) - 4017306..4018238 (-) 933 WP_025261026.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24083.32 Da        Isoelectric Point: 7.9111

>NTDB_id=577149 KQP88_RS16575 WP_025261023.1 4013282..4013956(-) (exbB) [Pseudomonas lijiangensis strain LJ2]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDNEKLKLLRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGALAGGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLVDAPVDLKSQARAGGKKK

Nucleotide


Download         Length: 675 bp        

>NTDB_id=577149 KQP88_RS16575 WP_025261023.1 4013282..4013956(-) (exbB) [Pseudomonas lijiangensis strain LJ2]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGTTGCCGATCATTTTGAGTTCCATCGCCGCTGCCGGCATCATCAT
TGAGCGTCTGTGGACGTTGCGTGCCAGCCGCATCACGCCGCCGCACCTGCTGGGGCAGGTCTGGCAATGGATTCAGGAAA
AGAAACTCGACAACGAAAAGCTCAAGTTACTGCGCGCCGATTCGCCACTGGGTGAAATCCTGGCGGCGGGTCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAAGCGGCCGCACGAGTCATCCATGATCTTGAGCGCTACCT
CAGCGCCCTGGGTTCCATCGCCGCCATGGCTCCCCTGTTGGGTCTGCTGGGTACGGTGCTGGGCATGATCGATATCTTCG
GTTCGTTCAACAGTTCGGGCGCCACGGCCAATGCCGGTGCGCTGGCTGGCGGTATTTCCAAGGCGCTGATCTGTACGGCA
TCGGGCCTGATCGTCGCGATTCCGGCGATTTTCTTCCATCGTTTCCTGCAAAGCCGCGTCGATGAGCTGGTGGTCGGCAT
GGAGCAACAGGCCATTCGTCTGGTGGAAGTGGTGCAGGGCGACCGTGATGTCGATCTGGTGGACGCGCCGGTCGATCTGA
AATCCCAGGCCCGTGCCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.553

91.964

0.75