Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   KP808_RS07590 Genome accession   NZ_CP076652
Coordinates   1707441..1709657 (+) Length   738 a.a.
NCBI ID   WP_230017945.1    Uniprot ID   -
Organism   Pseudomonas savastanoi strain MHT1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1702441..1714657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP808_RS07575 (KP808_07540) - 1704780..1705403 (+) 624 WP_058401668.1 glutathione S-transferase -
  KP808_RS07580 (KP808_07545) - 1705587..1706519 (+) 933 WP_002552672.1 ABC transporter ATP-binding protein -
  KP808_RS07585 (KP808_07550) - 1706516..1707304 (+) 789 WP_058401669.1 ABC transporter permease -
  KP808_RS07590 (KP808_07555) comA 1707441..1709657 (+) 2217 WP_230017945.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KP808_RS07595 (KP808_07560) exbB 1709739..1710416 (+) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KP808_RS07600 (KP808_07565) - 1710413..1710844 (+) 432 WP_002552677.1 biopolymer transporter ExbD -
  KP808_RS07605 (KP808_07570) lpxK 1710844..1711839 (+) 996 WP_230017947.1 tetraacyldisaccharide 4'-kinase -
  KP808_RS07610 (KP808_07575) - 1711857..1712042 (+) 186 WP_002552679.1 Trm112 family protein -
  KP808_RS07615 (KP808_07580) kdsB 1712039..1712803 (+) 765 WP_230017949.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KP808_RS07620 (KP808_07585) murB 1712838..1713857 (+) 1020 WP_230017951.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80385.72 Da        Isoelectric Point: 9.8035

>NTDB_id=576965 KP808_RS07590 WP_230017945.1 1707441..1709657(+) (comA) [Pseudomonas savastanoi strain MHT1]
MRTGMIALASGLVALRFLPALPPTWLLLLMPILALMLLPLRTYPLALFLLGFTWACVSAQWALNDRLVHRLDGQTLWLQG
KVVGLPSVAEGVVRFELEGARSRRAILPARIRVAWYGGPQVNSGERWRMAVKLKRPAGLVNPDAFDYEAWLLAQRIGATG
TVVDGQLLTPARGAWRDLIRQRLLAVDAQGREGGLAALVLGDGSGLSSTDWQVLQDTGTVHLLVISGQHIGLLAGVIYAL
VAGLARWGLWPRALPWLPCACALAFIAALGYGLLAGFEVPVRRACVMVAMVLLWRLRFRHLGVVWPLLLSFNAVLIFEPL
VTLQPGFWLSFAAVGILVLIFSGRLGAWNWWQSWTRAQWLIAIGLLPVLLALNLPISLSGPFANLLAVPWVSLIVLPPAL
LGTLLLPVPVVGEGLLWLAGGALEWLFMFLGWVAAVLPAWLPSAMPGWAWLLSLLGAFILLLPKGVPMRPLGWPLLLLCV
FPPLDSVPAGQVEVLQLDVGQGLAILLRTRNHTLLYDAGPRFGEFDIGQRVVVPAMRKAGVRHLDLMLISHADSDHAGGA
AAVHQAFPVDRVLGGELARLAPQLDARLCESDARWEWDGVVFSTWRWEQGPDGNPASCMLSVDAGGERLLLTGDIDVDAE
RAAIASGFDLRAHWLQSPHHGSRTSSSKVFLQAVGAVGVLISRGRNNAFGHPHPLVMARYRWLGMASYDSAELGAVSLRL
GTFGTPQAERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=576965 KP808_RS07590 WP_230017945.1 1707441..1709657(+) (comA) [Pseudomonas savastanoi strain MHT1]
ATGCGCACAGGGATGATCGCGCTCGCGTCGGGGCTTGTGGCCTTACGCTTTCTGCCTGCTTTGCCGCCGACCTGGCTGTT
GCTGCTGATGCCGATACTGGCGTTGATGCTGCTACCGCTTCGTACCTATCCACTGGCGCTGTTCCTGCTCGGTTTTACTT
GGGCGTGTGTTTCTGCGCAGTGGGCGTTGAATGACCGTCTGGTTCATCGTCTGGACGGTCAGACGCTTTGGCTGCAAGGC
AAGGTAGTCGGTTTGCCCAGTGTCGCCGAGGGCGTGGTGCGTTTCGAACTGGAAGGGGCAAGGTCGCGCAGGGCCATATT
GCCTGCACGCATCCGGGTGGCGTGGTACGGCGGTCCGCAGGTCAACAGCGGTGAGCGCTGGCGCATGGCGGTCAAACTCA
AGCGGCCGGCCGGGCTGGTCAATCCTGATGCTTTTGATTACGAAGCCTGGCTGTTGGCGCAGCGCATCGGTGCCACCGGT
ACGGTGGTGGATGGTCAACTGCTGACACCTGCGCGCGGGGCGTGGCGCGACCTTATTCGTCAGCGCTTGCTGGCGGTCGA
TGCGCAGGGCAGAGAGGGCGGCTTGGCGGCGCTGGTGCTGGGCGATGGCTCCGGGTTGTCGAGCACCGATTGGCAGGTGC
TGCAGGACACCGGCACGGTGCATCTGCTGGTGATTTCCGGCCAGCATATCGGTTTGCTGGCCGGGGTGATTTACGCGCTG
GTCGCAGGCCTTGCACGCTGGGGGCTGTGGCCACGGGCTTTACCCTGGCTGCCTTGTGCCTGTGCGCTGGCGTTCATCGC
TGCGCTGGGTTACGGGCTGCTGGCCGGTTTCGAGGTGCCGGTACGGCGTGCCTGTGTGATGGTCGCGATGGTGCTGCTGT
GGCGTTTGCGCTTTCGGCACCTGGGCGTTGTCTGGCCGTTGTTACTGTCATTCAACGCGGTGCTGATTTTCGAGCCGCTG
GTGACACTGCAGCCGGGGTTCTGGCTGTCTTTCGCGGCGGTTGGCATTCTGGTGCTGATTTTCAGTGGACGTCTCGGTGC
CTGGAATTGGTGGCAAAGCTGGACGCGTGCGCAGTGGCTGATCGCAATTGGCTTGCTGCCTGTTCTGCTGGCGCTGAACC
TGCCGATCAGCCTCAGCGGGCCGTTTGCCAATTTGCTGGCTGTGCCTTGGGTCAGCTTGATCGTCCTGCCGCCTGCGTTG
CTTGGAACACTGCTGCTGCCGGTCCCTGTTGTGGGCGAAGGCTTGCTCTGGCTGGCCGGAGGAGCGCTGGAGTGGCTGTT
TATGTTTCTCGGCTGGGTTGCCGCGGTCTTGCCCGCCTGGTTGCCCAGTGCAATGCCGGGCTGGGCGTGGCTGCTTAGTC
TGCTCGGGGCCTTCATTTTATTACTGCCCAAAGGCGTGCCGATGCGTCCGCTGGGTTGGCCATTGCTGTTGTTGTGCGTT
TTTCCGCCGCTCGACTCAGTGCCTGCAGGCCAGGTAGAAGTATTGCAGTTGGACGTGGGGCAGGGCCTGGCCATTCTCCT
GCGCACTCGAAATCACACGCTCTTGTACGACGCAGGTCCACGTTTCGGCGAGTTCGATATCGGTCAGCGCGTGGTCGTGC
CCGCCATGCGCAAGGCCGGTGTGCGTCATCTGGACCTGATGTTGATCAGTCACGCCGACTCCGATCATGCCGGGGGCGCA
GCGGCGGTTCATCAGGCATTTCCGGTTGACCGTGTACTGGGCGGTGAGCTGGCCAGGCTCGCGCCGCAACTCGACGCGCG
CTTGTGTGAGAGCGATGCGCGCTGGGAGTGGGATGGGGTGGTGTTCTCCACCTGGCGCTGGGAGCAGGGGCCTGATGGCA
ATCCCGCATCCTGCATGTTGAGTGTCGACGCCGGGGGCGAGCGTCTGCTGCTGACGGGTGATATCGACGTCGACGCGGAA
CGTGCGGCAATCGCCAGCGGTTTCGACCTTCGTGCCCATTGGTTGCAGTCCCCGCATCACGGCAGCCGGACCTCGTCATC
CAAAGTATTTCTTCAGGCCGTCGGAGCGGTTGGCGTGCTGATCTCCCGTGGCCGTAACAACGCCTTCGGCCACCCGCATC
CGTTGGTCATGGCGCGTTATCGATGGCTGGGTATGGCCAGTTATGACAGCGCTGAGCTGGGCGCTGTCAGTCTGCGTCTG
GGTACGTTCGGCACGCCGCAGGCAGAGCGCGCGCAACGGCGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-667)

Domain of unknown function (DUF4131) (DUF4131)

(22-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

61.925

97.154

0.602
  comA Ralstonia pseudosolanacearum GMI1000

32.904

100

0.381