Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   KP808_RS07595 Genome accession   NZ_CP076652
Coordinates   1709739..1710416 (+) Length   225 a.a.
NCBI ID   WP_002552676.1    Uniprot ID   A0A108WR79
Organism   Pseudomonas savastanoi strain MHT1     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1704739..1715416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP808_RS07575 (KP808_07540) - 1704780..1705403 (+) 624 WP_058401668.1 glutathione S-transferase -
  KP808_RS07580 (KP808_07545) - 1705587..1706519 (+) 933 WP_002552672.1 ABC transporter ATP-binding protein -
  KP808_RS07585 (KP808_07550) - 1706516..1707304 (+) 789 WP_058401669.1 ABC transporter permease -
  KP808_RS07590 (KP808_07555) comA 1707441..1709657 (+) 2217 WP_230017945.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KP808_RS07595 (KP808_07560) exbB 1709739..1710416 (+) 678 WP_002552676.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  KP808_RS07600 (KP808_07565) - 1710413..1710844 (+) 432 WP_002552677.1 biopolymer transporter ExbD -
  KP808_RS07605 (KP808_07570) lpxK 1710844..1711839 (+) 996 WP_230017947.1 tetraacyldisaccharide 4'-kinase -
  KP808_RS07610 (KP808_07575) - 1711857..1712042 (+) 186 WP_002552679.1 Trm112 family protein -
  KP808_RS07615 (KP808_07580) kdsB 1712039..1712803 (+) 765 WP_230017949.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KP808_RS07620 (KP808_07585) murB 1712838..1713857 (+) 1020 WP_230017951.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24212.52 Da        Isoelectric Point: 8.5280

>NTDB_id=576966 KP808_RS07595 WP_002552676.1 1709739..1710416(+) (exbB) [Pseudomonas savastanoi strain MHT1]
MWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQEKKLDGEKLKQLRADSPLGEILAAGLAN
SRHGREIMKECIEEAAARVIHELERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGVLAGGISKALICTA
SGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 678 bp        

>NTDB_id=576966 KP808_RS07595 WP_002552676.1 1709739..1710416(+) (exbB) [Pseudomonas savastanoi strain MHT1]
GTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGCTGCCGATTATTTTGAGCTCCATCGCCGCTGCCGGCATTATCAT
CGAGCGTCTGTGGACGCTGCGTGCCAGCCGTATCACGCCGCCGCATCTGCTCGGACAGGTCTGGCAGTGGATTCAGGAAA
AGAAGCTCGACGGCGAAAAGCTCAAGCAACTGCGCGCCGACTCGCCTCTGGGTGAAATTCTCGCCGCAGGTCTGGCCAAT
TCCAGGCACGGTCGCGAGATCATGAAGGAATGCATCGAAGAAGCCGCCGCCCGGGTTATCCATGAACTGGAGCGCTACCT
GAGCGCGCTGGGTTCGATTGCCGCCATGGCACCGCTGCTTGGCTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCG
GCTCGTTCAACAGTTCGGGGGCCACGGCCAATGCCGGTGTGCTCGCCGGTGGTATCTCCAAGGCGCTGATCTGTACCGCG
TCGGGCCTTATCGTGGCTATTCCGGCAATCTTCTTTCATCGCTTTCTGCAAAGTCGCGTCGATGAGCTGGTGGTCGGCAT
GGAGCAGCAGGCCATTCGTCTGGTTGAAGTGGTGCAGGGCGACCGCGATGTCGATCTGATCGACGCCAAAATCGATCTCA
AGTCGCTGGCCAGAGCGGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A108WR79

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

93.333

0.738