Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   LEUCM_RS07080 Genome accession   NZ_AP017929
Coordinates   1412792..1414237 (+) Length   481 a.a.
NCBI ID   WP_056936413.1    Uniprot ID   -
Organism   Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1407792..1419237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LEUCM_RS07045 (LACBS_01393) - 1408021..1408389 (+) 369 WP_025015752.1 hypothetical protein -
  LEUCM_RS07050 (LACBS_01394) - 1408398..1409153 (+) 756 WP_025015753.1 ScpA family protein -
  LEUCM_RS07055 (LACBS_01395) scpB 1409137..1409760 (+) 624 WP_076645129.1 SMC-Scp complex subunit ScpB -
  LEUCM_RS07060 (LACBS_01396) - 1409763..1410533 (+) 771 WP_011374726.1 pseudouridine synthase -
  LEUCM_RS07065 (LACBS_01397) - 1410849..1411424 (+) 576 WP_016265180.1 ECF transporter S component -
  LEUCM_RS07070 (LACBS_01398) - 1411500..1411730 (-) 231 WP_016265179.1 ferredoxin -
  LEUCM_RS07075 (LACBS_01399) - 1411767..1412795 (+) 1029 WP_025015755.1 helix-turn-helix domain-containing protein -
  LEUCM_RS07080 (LACBS_01400) recS 1412792..1414237 (+) 1446 WP_056936413.1 ATP-dependent DNA helicase RecQ Machinery gene
  LEUCM_RS07085 (LACBS_01401) - 1414306..1415013 (+) 708 WP_025015756.1 LysM domain-containing protein -
  LEUCM_RS07090 (LACBS_01402) cmk 1415080..1415739 (+) 660 WP_025015757.1 (d)CMP kinase -
  LEUCM_RS07095 (LACBS_01403) rpsA 1415834..1417045 (+) 1212 WP_025015758.1 30S ribosomal protein S1 -
  LEUCM_RS07100 (LACBS_01404) der 1417279..1418589 (+) 1311 WP_016265173.1 ribosome biogenesis GTPase Der -
  LEUCM_RS07105 (LACBS_01405) - 1418796..1419071 (+) 276 WP_011374717.1 HU family DNA-binding protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 54580.37 Da        Isoelectric Point: 5.2839

>NTDB_id=57693 LEUCM_RS07080 WP_056936413.1 1412792..1414237(+) (recS) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
MTSEQLIYDQLAQHFGYSTFKPGQLAVIQSVLAGQETLAVLPTGTGKSLCYQLPAYILGHTTVIVSPLIALMQDQVAQLN
YQGEKRAVAINSNLVPQQKYQLLTHLADYRFIFMAPETISQPEVIQALQRCQIDLFVVDEAHCISQWGIDFRPDYLVLAT
IKAQLRPTATLALTATANDRVRQDILNKLALKNAAQIMTSVDRPNIYLGVSQQPDEQAKNQFLASLVQKSQGPGIIYFSS
RQKTMEIAAFLQQETDLKIAYYHAALSTQERYLIQQQFMQGQLDLICTTNAFGMGINKADIRYVIHYHLPQNIESYLQEI
GRAGRDGQPAYALVLTTPQDLYLQQSLVSFGIPEPGLIRRYYQEPQLFKQSQGNEFELLRRYQQLGMTEEEVIKLLDNRQ
TEKQFSLQTMLDYLTLKGCRRQFIVNYFDQAPKTIEHSETCCGEQDSTDFLAQLDLEQAINYKTAETVVLTGWTGILDQL
F

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=57693 LEUCM_RS07080 WP_056936413.1 1412792..1414237(+) (recS) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
ATGACTTCTGAACAACTCATTTATGACCAGTTAGCGCAGCACTTTGGCTATTCAACCTTTAAACCGGGCCAGTTAGCGGT
TATTCAGTCGGTACTTGCTGGGCAGGAGACATTAGCCGTTTTACCAACTGGGACTGGGAAGTCGCTGTGTTATCAATTAC
CGGCCTATATCTTGGGGCATACGACTGTGATTGTCTCGCCACTAATCGCATTAATGCAAGATCAGGTCGCCCAATTGAAT
TACCAAGGGGAAAAGCGAGCTGTCGCCATTAATTCTAATTTAGTGCCTCAGCAAAAATACCAGTTGTTGACGCATTTAGC
GGACTACCGCTTTATTTTTATGGCACCGGAGACTATCAGTCAACCGGAAGTGATTCAAGCGCTCCAACGTTGCCAAATTG
ATTTATTTGTGGTTGATGAGGCCCATTGTATTTCACAATGGGGGATTGATTTTAGACCGGACTATTTAGTTTTAGCAACC
ATCAAGGCCCAATTGCGGCCAACCGCAACATTGGCTTTGACGGCAACTGCCAATGATCGTGTACGCCAAGATATTTTGAA
TAAGTTGGCGTTAAAAAACGCGGCCCAAATCATGACCTCTGTTGATCGCCCCAATATCTATTTGGGCGTGAGCCAACAAC
CTGATGAACAAGCAAAGAATCAATTTTTAGCCAGCTTAGTGCAAAAAAGCCAAGGTCCCGGGATTATTTATTTTTCAAGT
CGGCAAAAGACGATGGAGATTGCGGCCTTTTTGCAGCAAGAAACTGATCTGAAGATTGCGTATTACCACGCGGCGTTATC
AACCCAGGAGCGGTATTTGATTCAACAACAATTTATGCAAGGACAACTTGATTTGATTTGTACAACCAATGCTTTTGGGA
TGGGGATTAATAAGGCGGATATTCGCTATGTGATTCATTATCACCTGCCACAAAACATCGAAAGTTACTTGCAAGAAATC
GGACGGGCAGGTCGAGATGGGCAACCAGCCTATGCTTTAGTCCTAACAACTCCGCAAGATTTATATTTACAACAATCACT
CGTTTCATTTGGAATTCCGGAACCAGGCCTCATTCGGCGCTATTATCAGGAACCGCAATTATTTAAACAAAGTCAAGGCA
ATGAATTTGAACTACTACGTCGCTACCAGCAACTGGGGATGACCGAAGAAGAGGTCATTAAGTTATTGGATAATCGTCAA
ACCGAAAAGCAGTTTTCACTACAAACGATGCTGGATTATTTGACCCTCAAGGGCTGTCGACGGCAATTTATTGTGAACTA
TTTTGACCAGGCACCAAAGACGATTGAACACAGCGAAACGTGTTGCGGGGAACAGGATTCGACCGACTTTTTAGCACAAT
TAGACTTAGAACAGGCTATTAATTATAAAACCGCTGAAACCGTTGTTCTGACTGGTTGGACGGGAATCTTGGACCAATTA
TTTTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(220-326)

DEAD/DEAH box helicase (DEAD)

(22-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

42.257

93.971

0.397

Multiple sequence alignment