Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   KNV97_RS20215 Genome accession   NZ_CP076643
Coordinates   3060818..3061450 (-) Length   210 a.a.
NCBI ID   WP_004728582.1    Uniprot ID   A0A7X4LI26
Organism   Vibrio ostreae strain OG9-811     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3055818..3066450
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNV97_RS20195 (KNV97_20195) - 3055929..3057140 (+) 1212 WP_218562657.1 aspartate aminotransferase family protein -
  KNV97_RS20200 (KNV97_20200) astA 3057239..3058258 (+) 1020 WP_136485241.1 arginine N-succinyltransferase -
  KNV97_RS20205 (KNV97_20205) astD 3058293..3059750 (+) 1458 WP_218562658.1 succinylglutamate-semialdehyde dehydrogenase -
  KNV97_RS20210 (KNV97_20210) - 3059855..3060649 (+) 795 WP_136485237.1 DUF1338 domain-containing protein -
  KNV97_RS20215 (KNV97_20215) crp 3060818..3061450 (-) 633 WP_004728582.1 cAMP-activated global transcriptional regulator CRP Regulator
  KNV97_RS20220 (KNV97_20220) - 3061684..3062553 (-) 870 WP_136485235.1 phosphoribulokinase -
  KNV97_RS20225 (KNV97_20225) - 3062647..3062856 (-) 210 WP_136485232.1 YheU family protein -
  KNV97_RS20230 (KNV97_20230) - 3062899..3063873 (-) 975 WP_218562659.1 hydrolase -
  KNV97_RS20235 (KNV97_20235) - 3063971..3064444 (-) 474 WP_136485228.1 TIGR02444 family protein -
  KNV97_RS20240 (KNV97_20240) - 3064441..3066363 (-) 1923 WP_218563463.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23593.41 Da        Isoelectric Point: 8.2772

>NTDB_id=576837 KNV97_RS20215 WP_004728582.1 3060818..3061450(-) (crp) [Vibrio ostreae strain OG9-811]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=576837 KNV97_RS20215 WP_004728582.1 3060818..3061450(-) (crp) [Vibrio ostreae strain OG9-811]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACACTAGAGTGGTTTCTTTCCCATTGTCACATTCATAAGTACCCTTCAAA
AAGCACGCTGATTCACGCGGGCGAAAAAGCAGAAACCCTGTACTACATCGTTAAAGGTTCTGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAGGAGATGATTCTGTCTTACCTGAACCAAGGTGATTTCATCGGTGAACTTGGCTTGTTTGAAGAAGGC
CAAGAGCGTACTGCCTGGGTTCGTGCCAAATCTCCTTGTGAAGTGGCTGAAATTTCGTTCAAGAAATTCCGTCAGTTGAT
TCAGGTTAACCCTGATATCCTGATGCGTCTTTCTGGTCAGATGGCGCGCCGTCTGCAAGTCACCAGCCAAAAAGTAGGCG
ATCTGGCGTTCCTGGACGTAACGGGCCGTATCGCGCAGACTCTGCTGAACCTGGCGAAACAACCAGATGCGATGACCCAC
CCGGATGGTATGCAAATCAAGATTACCCGCCAGGAAATCGGTCAGATTGTCGGCTGTTCACGTGAAACCGTTGGCCGTAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATTTCTGCGCACGGTAAAACCATCGTGGTTTACGGCACGCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4LI26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

99.048

100

0.99
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467