Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   KNV97_RS12885 Genome accession   NZ_CP076643
Coordinates   1497726..1499978 (-) Length   750 a.a.
NCBI ID   WP_218563290.1    Uniprot ID   A0A975UC28
Organism   Vibrio ostreae strain OG9-811     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1492726..1504978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KNV97_RS12865 (KNV97_12865) kdsB 1494006..1494752 (-) 747 WP_136484216.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  KNV97_RS12870 (KNV97_12870) - 1494752..1494931 (-) 180 WP_136484217.1 Trm112 family protein -
  KNV97_RS12875 (KNV97_12875) lpxK 1494912..1495919 (-) 1008 WP_136484218.1 tetraacyldisaccharide 4'-kinase -
  KNV97_RS12880 (KNV97_12880) msbA 1495941..1497692 (-) 1752 WP_136484219.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  KNV97_RS12885 (KNV97_12885) comEC 1497726..1499978 (-) 2253 WP_218563290.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KNV97_RS12890 (KNV97_12890) - 1499987..1500517 (+) 531 WP_136484221.1 DUF2062 domain-containing protein -
  KNV97_RS12895 (KNV97_12895) lolE 1500757..1502001 (-) 1245 WP_218563291.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  KNV97_RS12900 (KNV97_12900) lolD 1502002..1502688 (-) 687 WP_136484223.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  KNV97_RS12905 (KNV97_12905) lolC 1502681..1503889 (-) 1209 WP_168796988.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  KNV97_RS12910 (KNV97_12910) - 1504065..1504634 (+) 570 WP_136484225.1 PilZ domain-containing protein -

Sequence

Protein


Download         Length: 750 a.a.        Molecular weight: 83917.67 Da        Isoelectric Point: 9.0119

>NTDB_id=576814 KNV97_RS12885 WP_218563290.1 1497726..1499978(-) (comEC) [Vibrio ostreae strain OG9-811]
MTLFSNYWTLASFSLTILSAPYWPWMPGWGVALLCLALCFAALTLPQWTGRLRGVGGIAFAVLVIITHAQLVRSQSNTIF
QAGQDITIKGEVDSFFKQITYGYEGSVVVRSINGQALPEYQYPTIRLISPVLLYPGDDFEFSVTVKPVFGRLNQVGFDLE
SFYLSQGWVARATVQRASSFRIVSNASWRSELYLQVREWMEHSQAKGLVLALTFGERDLISDQQWLSLRDSGLIHLVAIS
GLHIGMAFGIGYLLGLTLMRIHRHLLWSPMLLGACLALGYAWLAGFTIPTQRALIMCWLNVALTLSRVTITAPQRLLLTL
AVVLLLAPFSSLSRSFWLSFLAVGIVLYHVCDAASQRPWWKKLLYSQFSLTLLMLPVSAFFFAGFSLSSALYNLVFIPWF
TLVIVPGLFIALLLSQILPDSVWIWDWVGISFIPLDHALDWVGPSWVSVSQTSSLLLLTGLVLWAIREVISRRLLLAIGA
LFATHWLSIPHKDGWRVEVLDVGHGLAVMIERHGHYLLYDTARSWPGGSFARSLIEPLLVYWQARKLDGVIISHTDNDHA
GGLADVIERLQPGWIIASQQHPDWLACTKGQRWHWQGLELTALWPPAQVSRADNLHSCVIRIEDKTFGHSLLLSGDVTAV
GEWLLSREPSVVKSDVMIVPHHGSQTSSSSGFIERVQPKIAIASLAKGNQWNLPHPRVVARYQAAGAQWIDTGASGQVSL
IYRAQTRHLSTMRQSTASTWYRQMLRKEVE

Nucleotide


Download         Length: 2253 bp        

>NTDB_id=576814 KNV97_RS12885 WP_218563290.1 1497726..1499978(-) (comEC) [Vibrio ostreae strain OG9-811]
ATGACTCTCTTTTCGAATTACTGGACGCTCGCTTCGTTCTCGCTCACCATACTGTCAGCGCCTTACTGGCCGTGGATGCC
GGGATGGGGCGTTGCACTTTTATGCCTTGCATTGTGCTTTGCTGCTCTTACTCTGCCACAATGGACGGGCAGATTGAGAG
GAGTGGGAGGGATTGCGTTCGCCGTGCTGGTTATCATAACACATGCACAGTTAGTGAGATCTCAATCCAACACTATTTTT
CAAGCAGGGCAAGATATTACCATAAAAGGCGAAGTTGACAGCTTTTTTAAACAAATTACTTACGGATATGAAGGAAGTGT
GGTAGTCAGATCAATAAATGGTCAAGCTCTGCCCGAGTATCAATATCCAACTATACGCTTAATATCGCCCGTGCTGCTTT
ATCCGGGCGATGATTTTGAATTTTCTGTGACGGTAAAGCCTGTGTTCGGCCGCCTGAATCAGGTCGGTTTTGACCTCGAA
TCTTTCTATTTGAGCCAGGGTTGGGTTGCCCGGGCAACGGTGCAACGGGCATCCTCATTTCGTATCGTGTCTAATGCCAG
TTGGCGCTCTGAGCTTTATCTGCAAGTACGGGAATGGATGGAGCACAGTCAGGCTAAGGGCCTGGTGCTGGCACTGACAT
TTGGCGAGCGTGACCTGATTTCAGACCAGCAGTGGCTCTCTTTGCGTGACAGCGGCCTGATTCATCTGGTGGCGATTTCC
GGACTGCATATCGGTATGGCGTTTGGCATCGGTTACCTGCTTGGCCTGACGCTGATGCGTATTCATCGCCATCTGTTGTG
GAGCCCGATGCTACTTGGTGCTTGTCTGGCTCTGGGGTACGCGTGGCTGGCCGGTTTTACCATCCCCACACAACGTGCGC
TTATCATGTGTTGGCTCAACGTAGCGTTGACGCTCAGCCGGGTTACTATTACGGCCCCGCAGCGTCTGCTGCTCACTTTG
GCTGTGGTTTTGCTGCTGGCGCCATTCTCTTCGCTCAGTCGCAGCTTCTGGTTATCGTTTCTCGCGGTTGGTATTGTGCT
TTATCACGTGTGCGATGCGGCTTCACAGCGTCCCTGGTGGAAAAAACTGCTCTATAGTCAGTTCAGCCTTACGTTGCTAA
TGTTACCGGTTTCCGCGTTTTTCTTCGCCGGATTCAGTCTCAGCTCAGCCCTGTACAATCTGGTGTTTATTCCCTGGTTT
ACTCTGGTGATTGTGCCCGGACTGTTTATTGCGTTACTGCTGAGTCAGATACTGCCTGACAGCGTATGGATATGGGATTG
GGTGGGTATCAGTTTTATCCCGCTCGATCATGCTTTGGATTGGGTTGGGCCGAGTTGGGTCTCTGTCAGCCAAACCAGCA
GCTTACTGCTGCTGACCGGCTTAGTGTTGTGGGCCATACGTGAAGTGATCAGTCGGCGCTTGCTGCTGGCTATCGGTGCG
CTGTTTGCGACTCACTGGTTGTCGATACCACATAAGGACGGCTGGCGGGTTGAAGTGCTCGATGTGGGGCATGGCCTGGC
GGTAATGATAGAGCGCCACGGACATTATCTGCTGTATGACACCGCACGCAGCTGGCCCGGCGGCAGTTTTGCGCGCAGCC
TGATTGAGCCACTGCTGGTTTACTGGCAGGCCAGGAAACTCGATGGGGTAATCATCAGCCACACTGACAATGATCACGCC
GGAGGCCTGGCCGATGTTATTGAGCGTCTGCAGCCTGGCTGGATTATTGCCAGTCAGCAGCATCCTGACTGGCTGGCTTG
TACGAAAGGGCAGCGCTGGCATTGGCAGGGGCTGGAGTTGACGGCCTTGTGGCCTCCTGCGCAAGTATCGCGGGCTGACA
ATCTGCATTCCTGTGTGATTCGGATTGAAGATAAAACATTTGGTCACTCGCTGCTGCTGTCCGGTGATGTGACGGCTGTC
GGTGAGTGGTTACTTAGTCGCGAGCCTTCGGTGGTAAAGAGTGATGTGATGATCGTACCACATCACGGCAGCCAGACTTC
TTCCAGCTCCGGCTTCATTGAACGGGTACAACCGAAGATTGCGATTGCGTCACTGGCTAAAGGCAACCAATGGAATCTGC
CTCATCCACGGGTGGTTGCCCGCTATCAGGCGGCCGGTGCACAATGGATTGATACCGGCGCGAGCGGCCAGGTTTCATTG
ATATATCGCGCACAAACTCGCCACTTATCGACTATGCGCCAAAGTACAGCTTCGACTTGGTATAGGCAGATGCTGCGTAA
AGAGGTAGAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(212-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(502-684)

Domain of unknown function (DUF4131) (DUF4131)

(20-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

53.104

100

0.536
  comEC Vibrio campbellii strain DS40M4

41.393

100

0.42
  comEC Vibrio parahaemolyticus RIMD 2210633

39.789

100

0.403