Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KP014_RS03135 Genome accession   NZ_CP076607
Coordinates   654468..654962 (-) Length   164 a.a.
NCBI ID   WP_036598023.1    Uniprot ID   A0A1H8TLK2
Organism   Paenibacillus sophorae strain DSM 23020     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 649468..659962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KP014_RS03120 (KP014_03120) opp4A 649750..651486 (-) 1737 WP_036598027.1 oligopeptide ABC transporter substrate-binding protein -
  KP014_RS03125 (KP014_03125) - 651662..653611 (-) 1950 WP_036598025.1 DNA mismatch repair protein MutS -
  KP014_RS03130 (KP014_03130) rpsR 654174..654446 (-) 273 WP_025692516.1 30S ribosomal protein S18 -
  KP014_RS03135 (KP014_03135) ssbA 654468..654962 (-) 495 WP_036598023.1 single-stranded DNA-binding protein Machinery gene
  KP014_RS03140 (KP014_03140) rpsF 655013..655297 (-) 285 WP_036598021.1 30S ribosomal protein S6 -
  KP014_RS03145 (KP014_03145) - 655518..655715 (+) 198 WP_036598019.1 YjzC family protein -
  KP014_RS03155 (KP014_03155) - 656271..656951 (-) 681 WP_036589178.1 ABC transporter permease -
  KP014_RS03160 (KP014_03160) - 656944..657864 (-) 921 WP_036589181.1 ABC transporter ATP-binding protein -
  KP014_RS03165 (KP014_03165) - 658006..658941 (-) 936 WP_036589184.1 sensor histidine kinase -
  KP014_RS03170 (KP014_03170) - 658938..659657 (-) 720 WP_036589187.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 17912.75 Da        Isoelectric Point: 5.0001

>NTDB_id=576636 KP014_RS03135 WP_036598023.1 654468..654962(-) (ssbA) [Paenibacillus sophorae strain DSM 23020]
MLNRVILIGRLTRDPELRYTPAGVAVTQFTLAVDRPFTSQGGEREADFIPVVTWRQLAETCANYLRKGRLTAVEGRIQVR
NYENNEGKRVYVTEVIADNVRFLESSQSREGGNASGGGNMPEPPSYGGGGRGNSGNSGFSRNNNQDPFSGDGKPIDISDD
DLPF

Nucleotide


Download         Length: 495 bp        

>NTDB_id=576636 KP014_RS03135 WP_036598023.1 654468..654962(-) (ssbA) [Paenibacillus sophorae strain DSM 23020]
ATGTTGAACCGTGTCATACTGATCGGCCGATTGACCCGCGATCCTGAGCTGCGCTATACGCCTGCCGGCGTTGCCGTAAC
CCAGTTTACGCTTGCCGTAGACCGGCCTTTTACAAGCCAAGGCGGCGAACGTGAAGCGGATTTCATTCCGGTCGTAACCT
GGAGACAGCTGGCGGAGACCTGTGCCAATTACTTGCGTAAAGGTCGGCTGACGGCGGTAGAGGGACGTATCCAAGTACGG
AATTACGAGAATAACGAAGGCAAACGTGTATACGTAACCGAAGTTATTGCCGATAATGTCCGGTTCCTGGAATCTTCCCA
GAGCCGTGAGGGCGGAAACGCATCCGGCGGGGGGAATATGCCCGAGCCACCTTCATACGGCGGCGGCGGACGCGGAAACA
GCGGAAATAGCGGTTTCTCGCGCAACAATAATCAGGATCCCTTTTCGGGCGACGGTAAGCCGATTGATATATCGGACGAT
GATTTGCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1H8TLK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.233

100

0.579
  ssb Latilactobacillus sakei subsp. sakei 23K

51.163

100

0.537
  ssbB Bacillus subtilis subsp. subtilis str. 168

57.692

63.415

0.366