Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   KMZ14_RS09870 Genome accession   NZ_CP076603
Coordinates   2010779..2011483 (-) Length   234 a.a.
NCBI ID   WP_004894131.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain MCDA01     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2005779..2016483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ14_RS09860 (KMZ14_09825) clpB 2006718..2009297 (-) 2580 WP_163166551.1 ATP-dependent chaperone ClpB -
  KMZ14_RS09865 (KMZ14_09830) - 2009548..2010597 (-) 1050 WP_273797761.1 NADP(H)-dependent aldo-keto reductase -
  KMZ14_RS09870 (KMZ14_09835) crp 2010779..2011483 (-) 705 WP_004894131.1 cAMP-activated global transcriptional regulator CRP Regulator
  KMZ14_RS09875 (KMZ14_09840) - 2011631..2012053 (+) 423 WP_004812288.1 OsmC family protein -
  KMZ14_RS09880 (KMZ14_09845) - 2012133..2013164 (-) 1032 WP_273797762.1 metallophosphoesterase -
  KMZ14_RS09885 (KMZ14_09850) - 2013470..2015707 (-) 2238 WP_004894125.1 NADP-dependent isocitrate dehydrogenase -

Sequence

Protein


Download         Length: 234 a.a.        Molecular weight: 26296.92 Da        Isoelectric Point: 4.6679

>NTDB_id=576598 KMZ14_RS09870 WP_004894131.1 2010779..2011483(-) (crp) [Acinetobacter schindleri strain MCDA01]
MTSNFSQLSTDALSPGQLPESVKALLKRAYINRYPKRTTIVDAGTESKSLYLILKGSVSIILREDDEREIVVAYLNAGDF
FGEMGLFEANPQRTAEVRTRDVCEIAEISYENFHELSKQYPDLSYAVFAQLVRRLKNTTRKVTDLAFIDVSGRIARCLID
LSAQPEAMILPNGRQIRITRQEIGRIVGCSREMVGRVLKTLEEQGMIETDGKAILIFDASLEQNEVPAEDDSEE

Nucleotide


Download         Length: 705 bp        

>NTDB_id=576598 KMZ14_RS09870 WP_004894131.1 2010779..2011483(-) (crp) [Acinetobacter schindleri strain MCDA01]
ATGACTTCAAACTTTTCACAATTAAGCACAGATGCACTTTCTCCGGGGCAATTGCCAGAATCCGTGAAGGCATTATTAAA
ACGTGCATATATCAACCGTTACCCAAAACGTACAACGATCGTTGATGCAGGAACAGAATCTAAATCTTTATATTTGATTC
TGAAGGGGTCTGTATCGATCATTCTTCGTGAAGATGATGAGCGTGAAATTGTCGTGGCGTATCTGAACGCGGGTGACTTT
TTTGGGGAAATGGGCTTATTCGAAGCAAATCCACAACGTACTGCAGAAGTGCGTACGCGTGACGTTTGTGAAATTGCAGA
GATTAGCTACGAAAACTTCCATGAACTGAGCAAACAATATCCTGACTTGAGTTATGCGGTATTTGCGCAACTGGTTCGCC
GTCTGAAGAATACGACACGTAAAGTAACTGACCTGGCATTTATTGATGTTTCTGGTCGTATCGCACGTTGTCTGATTGAT
CTTTCAGCTCAGCCTGAAGCGATGATCTTGCCAAATGGCCGTCAGATCCGTATTACCCGTCAGGAAATTGGCCGTATTGT
AGGTTGTTCCCGTGAAATGGTCGGTCGCGTACTGAAAACTCTTGAAGAGCAAGGCATGATCGAAACAGATGGTAAAGCAA
TTCTGATCTTTGATGCCTCACTGGAACAGAACGAAGTACCAGCTGAAGATGATTCAGAAGAATAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(33-120)

Bacterial regulatory proteins, crp family (Crp)

(176-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Acinetobacter baumannii D1279779

93.162

100

0.932
  crp Vibrio cholerae strain A1552

47.805

87.607

0.419
  crp Haemophilus influenzae Rd KW20

48.718

83.333

0.406