Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   KMZ14_RS01110 Genome accession   NZ_CP076603
Coordinates   231500..232918 (-) Length   472 a.a.
NCBI ID   WP_004810143.1    Uniprot ID   N9N911
Organism   Acinetobacter schindleri strain MCDA01     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 226500..237918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ14_RS01095 (KMZ14_01095) lptG 227533..228603 (+) 1071 WP_004810149.1 LPS export ABC transporter permease LptG -
  KMZ14_RS01100 (KMZ14_01100) gpmI 228728..230278 (+) 1551 WP_273798363.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  KMZ14_RS01105 (KMZ14_01105) - 230301..231473 (+) 1173 WP_273798364.1 S41 family peptidase -
  KMZ14_RS01110 (KMZ14_01110) pilR 231500..232918 (-) 1419 WP_004810143.1 sigma-54-dependent transcriptional regulator Regulator
  KMZ14_RS01115 (KMZ14_01115) pilS 232942..234507 (-) 1566 WP_004896392.1 two-component system sensor histidine kinase NtrB Regulator
  KMZ14_RS01120 (KMZ14_01120) - 234557..235192 (-) 636 WP_004810139.1 response regulator transcription factor GacA -
  KMZ14_RS01125 (KMZ14_01125) - 235414..236469 (+) 1056 WP_026056747.1 serine hydrolase -
  KMZ14_RS01130 (KMZ14_01130) thrC 236535..237674 (-) 1140 WP_004810136.1 threonine synthase -

Sequence

Protein


Download         Length: 472 a.a.        Molecular weight: 53538.51 Da        Isoelectric Point: 6.0929

>NTDB_id=576574 KMZ14_RS01110 WP_004810143.1 231500..232918(-) (pilR) [Acinetobacter schindleri strain MCDA01]
MEQQPLVLLVDDEEDLCTLMQMSLMRMGIRTHIAHRLEDAKKRLADHQYDACLTDLNLPDGNGLQLLEFISEHHPSLPVA
VLTAYGNMDIAIAALKAGAFDFVSKPINQKHLEQLLQKALNKPVDYQSNQQDTLEYKMLIGQSKPIQQLRTTLHKIARSQ
APVFITGESGTGKEVVANLVHRLSNRSEGPFIAINCGAIPAELMESELFGHKKGSFTGAMQDKQGLIQSAHGGSLFLDEI
AELPLSMQVKLLRAVQEKRIRPLGSDIEIDVDFRVISASHQDLEAQVQQGKFRQDLFFRIHVMDLVLPPLRERGNDILLL
AEHFIQKICQEWQIPVKRLTEHSKEQLLTQYYPGNVRELRNIIERAITLSDEDTIDIQHLQTAPLRQSFVTSEITSNIAS
ESSNTTDTFIVPKKLPEEGLELYMEKIEKEILLNALNLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTDEEE

Nucleotide


Download         Length: 1419 bp        

>NTDB_id=576574 KMZ14_RS01110 WP_004810143.1 231500..232918(-) (pilR) [Acinetobacter schindleri strain MCDA01]
GTGGAACAACAACCACTGGTACTATTGGTCGATGATGAAGAAGATCTCTGTACGCTCATGCAGATGTCGCTCATGCGTAT
GGGAATTCGCACGCATATCGCCCATCGTCTGGAGGATGCTAAAAAACGCTTGGCAGATCATCAGTATGACGCTTGCCTTA
CGGACTTGAATCTGCCTGATGGCAATGGCTTGCAGTTACTGGAATTTATCAGTGAGCATCATCCTTCCCTACCGGTTGCT
GTATTAACTGCCTATGGCAATATGGATATTGCCATTGCTGCACTCAAGGCAGGTGCCTTTGACTTTGTCAGTAAGCCGAT
CAATCAGAAACATCTGGAACAGTTACTGCAAAAAGCACTAAATAAGCCTGTAGATTACCAATCCAATCAGCAAGATACCC
TAGAATATAAAATGCTGATTGGCCAGTCCAAGCCGATTCAGCAATTACGTACGACCTTGCATAAAATTGCCCGCTCTCAA
GCCCCGGTATTTATCACCGGTGAATCTGGTACAGGTAAAGAAGTTGTAGCAAATCTGGTTCATCGCCTCAGTAACCGGAG
TGAAGGACCCTTTATTGCCATTAACTGTGGCGCAATTCCAGCTGAACTGATGGAAAGTGAGCTGTTCGGGCACAAGAAAG
GCAGCTTTACTGGCGCCATGCAGGACAAACAGGGGCTGATCCAGTCTGCACATGGCGGTAGTTTATTTCTGGATGAAATT
GCAGAACTTCCACTTAGTATGCAGGTCAAACTGCTACGTGCAGTACAGGAAAAACGGATTCGCCCTTTAGGTTCAGATAT
CGAAATTGATGTGGATTTTCGCGTCATCAGCGCCAGTCATCAGGACCTGGAAGCACAGGTACAGCAAGGTAAATTTCGTC
AGGATTTATTCTTCCGCATTCATGTGATGGATCTAGTGTTGCCACCATTACGTGAGCGTGGTAATGACATTCTGCTGCTG
GCTGAACACTTTATTCAGAAGATCTGTCAGGAATGGCAAATCCCTGTGAAACGCCTGACTGAACATAGCAAAGAGCAGTT
ACTGACTCAATACTATCCAGGAAATGTCCGGGAATTGCGTAATATCATCGAGCGAGCTATTACCCTCAGCGATGAAGACA
CAATTGATATCCAGCATTTGCAAACTGCACCTTTACGCCAGAGTTTTGTGACCTCCGAAATCACATCGAATATAGCATCC
GAATCGAGTAACACTACTGACACTTTTATCGTACCGAAAAAACTGCCTGAAGAAGGTCTTGAACTGTATATGGAGAAAAT
CGAGAAAGAAATTTTGCTAAATGCATTGAATCTGACTCACTGGAACCGTACGCTTGCCGCAAAAAAGTTGGGCATGTCTT
TCCGCTCGCTGCGTTATCGTCTGAAGAAATTTGGGCTCGATACCGATGAAGAAGAATGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(139-305)

Response regulator receiver domain (Response_reg)

(7-116)

Bacterial regulatory protein, Fis family (HTH_8)

(424-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9N911

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

74.895

100

0.752
  pilR Pseudomonas aeruginosa PAK

48.188

99.364

0.479