Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   KMZ14_RS01115 Genome accession   NZ_CP076603
Coordinates   232942..234507 (-) Length   521 a.a.
NCBI ID   WP_004896392.1    Uniprot ID   -
Organism   Acinetobacter schindleri strain MCDA01     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 227942..239507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KMZ14_RS01100 (KMZ14_01100) gpmI 228728..230278 (+) 1551 WP_273798363.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  KMZ14_RS01105 (KMZ14_01105) - 230301..231473 (+) 1173 WP_273798364.1 S41 family peptidase -
  KMZ14_RS01110 (KMZ14_01110) pilR 231500..232918 (-) 1419 WP_004810143.1 sigma-54-dependent transcriptional regulator Regulator
  KMZ14_RS01115 (KMZ14_01115) pilS 232942..234507 (-) 1566 WP_004896392.1 two-component system sensor histidine kinase NtrB Regulator
  KMZ14_RS01120 (KMZ14_01120) - 234557..235192 (-) 636 WP_004810139.1 response regulator transcription factor GacA -
  KMZ14_RS01125 (KMZ14_01125) - 235414..236469 (+) 1056 WP_026056747.1 serine hydrolase -
  KMZ14_RS01130 (KMZ14_01130) thrC 236535..237674 (-) 1140 WP_004810136.1 threonine synthase -
  KMZ14_RS01135 (KMZ14_01135) - 237731..239035 (-) 1305 WP_071319761.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59344.70 Da        Isoelectric Point: 6.3959

>NTDB_id=576575 KMZ14_RS01115 WP_004896392.1 232942..234507(-) (pilS) [Acinetobacter schindleri strain MCDA01]
MSQRSSYSELNQYLLGTWYAAYRLIISTGLLLIFVLTYPEHTSDLEYPKLYHYVLSSFIAIALIQLFVLKYFKKFVQQQL
TGIFIVDVCALSLLTLATNGTNLQLSMLFVITIFAASILLNAQKALVITLIAVISVIYQHFITSLFTLSSLGNIGNSAIL
AFMFFVVYGIGQIAVRRFQILENVNFSQSMELYRLQNINRYILEQIETGYLVLDENCHVVLSNPAACHLLGIQQMYAHDT
FPLYQSQPDLFELIRFEDLENGERFQFESQQSRFNIHVQVQKLIVPHQTLMLLVLQDARKLNQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANDLLPGCEQDQQQVLHGMISKQATRINRIIEDTLNMVKNKETHPVSIQLNEFIPQCIHEDLADIAD
QIKLNIDMRLDIQFDEAQLRQVLVNLLRNAVRHNDPAVGYVELKVHPYEHKVWIDVRDFGQGVAPADQSLLFKPFFSTSI
NGTGLGLYLSHSFCEANQAQLNYIQQEQGACFRISCQRITV

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=576575 KMZ14_RS01115 WP_004896392.1 232942..234507(-) (pilS) [Acinetobacter schindleri strain MCDA01]
ATGTCGCAGCGATCTTCTTATTCAGAGCTTAACCAATATCTGCTGGGCACTTGGTATGCGGCATACCGCCTGATCATCAG
TACTGGTTTACTGCTGATTTTCGTGCTCACTTATCCTGAGCACACCAGCGATTTAGAATATCCCAAGCTGTATCATTATG
TACTGAGTAGCTTCATTGCTATCGCCTTGATCCAGCTTTTTGTTCTGAAGTATTTTAAGAAATTTGTTCAGCAACAGCTG
ACCGGTATTTTTATTGTCGATGTCTGTGCACTCAGCCTGCTGACCTTGGCCACGAATGGCACCAATCTACAGCTCAGTAT
GCTATTCGTGATTACTATCTTTGCCGCTTCCATTTTACTGAATGCACAAAAAGCGCTGGTGATTACCTTGATTGCGGTCA
TCAGTGTGATTTACCAGCATTTCATCACCAGCCTGTTTACCCTTTCCTCTCTGGGTAATATCGGCAATAGCGCCATATTG
GCTTTCATGTTTTTTGTGGTCTATGGCATCGGGCAAATTGCAGTCCGACGTTTCCAGATCTTGGAAAATGTCAATTTTTC
CCAGTCCATGGAACTTTATCGTCTACAAAATATTAACCGTTATATTCTGGAACAGATTGAGACTGGTTATCTGGTTCTCG
ATGAAAACTGTCATGTGGTGCTGAGTAATCCTGCTGCCTGCCACTTGCTTGGCATCCAGCAAATGTATGCACATGACACG
TTTCCATTGTACCAGTCACAACCAGATCTGTTTGAGCTGATCCGCTTTGAAGATCTGGAAAATGGCGAACGCTTTCAGTT
TGAATCCCAGCAAAGCCGTTTCAATATTCATGTTCAGGTACAAAAACTGATTGTACCGCATCAAACTTTAATGTTGCTGG
TGCTGCAAGATGCGCGAAAACTTAATCAACAAGTCCAGCAATTAAAACTGGCGGCACTCGGGCAACTTTCCGCCAGTATT
GCCCATGAGATTCGTAATCCGCTTGCAGCGATTGTTCAAGCCAATGATCTGTTACCTGGTTGTGAACAGGACCAGCAGCA
GGTGCTGCACGGCATGATCAGCAAACAGGCAACACGAATCAACCGGATTATTGAAGATACGCTGAATATGGTGAAGAATA
AAGAGACTCATCCAGTATCTATTCAGCTGAATGAATTTATTCCACAATGTATCCATGAGGATTTGGCTGATATTGCTGAT
CAGATTAAGCTGAATATTGATATGCGACTGGATATCCAGTTTGATGAAGCCCAGCTACGTCAAGTATTGGTCAATTTATT
GCGTAATGCCGTGCGGCATAACGATCCAGCCGTAGGCTATGTAGAATTAAAAGTTCATCCTTATGAACATAAAGTCTGGA
TTGATGTACGGGATTTTGGTCAGGGTGTGGCGCCTGCCGATCAGAGTCTGCTGTTTAAACCATTTTTCAGCACTTCAATT
AATGGTACAGGACTAGGGTTATATTTATCCCACAGTTTCTGTGAGGCCAATCAGGCCCAGCTGAACTATATACAACAAGA
ACAGGGTGCCTGCTTCCGGATTAGCTGCCAGCGCATCACTGTTTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-515)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

57.228

96.929

0.555