Detailed information NTG0057637

Bioinformatically predicted

Overview

• Name: ccpA
• Type: Regulator
• Locus tag: LEUCM_RS00405
• Genome accession: NZ_AP017929
• Coordinates: 55707..56708 (-)
• Length: 333 a.a.
• NCBI ID: WP_016264677.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13
• Function: regulate comCDE transcription and transformation (predicted from homology) Competence regulation

Genomic Context

Location: 50707..61708

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LEUCM_RS00390 (LACBS_00051)	-	51203..51907 (+)	705	WP_016264680.1	DUF4811 domain-containing protein	-
LEUCM_RS00395 (LACBS_00052)	-	52113..52820 (-)	708	WP_011374126.1	glucosamine-6-phosphate deaminase	-
LEUCM_RS00400 (LACBS_00053)	-	53104..55659 (+)	2556	WP_035147028.1	transglycosylase domain-containing protein	-
LEUCM_RS00405 (LACBS_00054)	ccpA	55707..56708 (-)	1002	WP_016264677.1	catabolite control protein A	Regulator
LEUCM_RS00410 (LACBS_00055)	-	56925..58022 (+)	1098	WP_016264676.1	Xaa-Pro peptidase family protein	-
LEUCM_RS00415 (LACBS_00056)	-	58616..59053 (-)	438	WP_016264675.1	YtxH domain-containing protein	-
LEUCM_RS00420 (LACBS_00057)	-	59059..59493 (-)	435	WP_016264674.1	DUF948 domain-containing protein	-
LEUCM_RS00425 (LACBS_00058)	-	59651..60538 (+)	888	WP_011374119.1	mechanosensitive ion channel family protein	-
LEUCM_RS00430 (LACBS_00059)	-	60563..61459 (+)	897	WP_016264673.1	DUF368 domain-containing protein	-

Sequence

Protein

• Length: 333 a.a.
• Molecular weight: 36333.50 Da
• Isoelectric Point: 4.7948

>NTDB_id=57637 LEUCM_RS00405 WP_016264677.1 55707..56708(-) (ccpA) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
MEKQTITIYDVAREADVSMATVSRVVNGNPNVKPATRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVIIPDVSDIYFAS
LARGIDDVATMYKYNIILANSDENNQKEVQVLNTLLAKQVDGLIYMGHSISDAIRAEFARSKTPIVLAGSIDPDEQVGSV
NIDYVAAVKDATLKLIKNGNEKVAFICGNLDFPINSKYRLRGYKDALNEAGIPYDESLIFETEYSYSAGEALFGKVQATG
ATAAVVSDDELAVGVLNAAVDAGVNIPTDFEIVTSNNTKLTEMVRPKMTSISQPLYDMGAVGMRLLTKMMNKEEIDDKTI
LLPYSIVDRQSTK

Nucleotide

• Length: 1002 bp

>NTDB_id=57637 LEUCM_RS00405 WP_016264677.1 55707..56708(-) (ccpA) [Latilactobacillus sakei subsp. sakei DSM 20017 = JCM 1157 strain LT-13]
ATGGAAAAACAAACAATTACAATTTACGACGTTGCGCGTGAAGCTGACGTATCAATGGCGACTGTCTCACGGGTTGTTAA
CGGGAACCCCAACGTTAAGCCTGCCACTCGCAAGAAAGTGCTTGAAGTGATCGACCGTTTAGACTATCGTCCTAACGCTG
TTGCTCGTGGTTTGGCAAGTAAGAAAACAACAACTGTTGGGGTTATTATCCCAGACGTTAGTGATATCTACTTTGCTTCA
TTAGCACGCGGGATTGATGATGTTGCCACAATGTACAAGTACAACATCATTTTAGCGAACTCAGATGAAAACAACCAAAA
GGAAGTTCAAGTATTGAATACCTTATTGGCAAAACAAGTAGATGGTTTAATCTACATGGGTCACAGTATCTCAGATGCAA
TCCGTGCTGAATTCGCCCGTTCTAAGACACCAATCGTATTAGCTGGTTCAATCGATCCAGACGAACAAGTCGGTAGTGTT
AATATTGACTACGTTGCAGCCGTTAAGGACGCAACTTTGAAGTTAATCAAGAACGGTAACGAAAAAGTCGCCTTCATCTG
TGGCAACTTAGATTTTCCAATCAACAGCAAATATCGTTTACGTGGCTATAAAGATGCCTTGAACGAAGCTGGTATTCCTT
ATGACGAAAGCTTAATTTTCGAAACAGAATACAGTTACAGTGCTGGTGAAGCCTTATTCGGTAAGGTTCAAGCAACTGGC
GCAACTGCTGCTGTTGTCAGTGACGATGAATTAGCCGTAGGTGTTTTAAATGCTGCTGTTGATGCAGGGGTTAATATTCC
AACTGACTTTGAAATTGTGACAAGTAATAACACGAAGTTAACTGAAATGGTTCGTCCTAAGATGACATCAATCTCACAAC
CTTTATATGATATGGGTGCTGTTGGGATGCGTCTGTTAACGAAGATGATGAACAAAGAAGAAATCGATGATAAGACAATC
CTATTGCCATATAGTATTGTTGATCGTCAATCAACTAAATAA

Domains

Predicted by InterProScan.

• Periplasmic binding protein-like domain (Peripla_BP_3) (175-332)

• Bacterial regulatory proteins, lacI family (LacI) (7-52)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccpA	Streptococcus pneumoniae D39	62.31	98.799	0.616
ccpA	Streptococcus gordonii str. Challis substr. CH1	60.486	98.799	0.598
ccpA	Lactococcus lactis subsp. lactis strain DGCC12653	56.456	100	0.565