Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   JNUCC24_RS16840 Genome accession   NZ_CP076532
Coordinates   3279319..3280008 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus sp. JNUCC-24     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3274319..3285008
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC24_RS16805 (JNUCC24_16805) - 3274397..3274879 (-) 483 WP_034623751.1 flagellar protein FlgN -
  JNUCC24_RS16810 (JNUCC24_16810) flgM 3274898..3275161 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  JNUCC24_RS16815 (JNUCC24_16815) - 3275241..3275660 (-) 420 WP_024423621.1 TIGR03826 family flagellar region protein -
  JNUCC24_RS16820 (JNUCC24_16820) comFC 3275718..3276374 (-) 657 WP_253207496.1 ComF family protein Machinery gene
  JNUCC24_RS16825 (JNUCC24_16825) - 3276401..3276694 (-) 294 WP_024423623.1 competence protein ComFB -
  JNUCC24_RS16830 (JNUCC24_16830) comFA 3276743..3278140 (-) 1398 WP_142927723.1 DEAD/DEAH box helicase Machinery gene
  JNUCC24_RS16835 (JNUCC24_16835) - 3278261..3279103 (-) 843 WP_024423625.1 DegV family protein -
  JNUCC24_RS16840 (JNUCC24_16840) degU 3279319..3280008 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  JNUCC24_RS16845 (JNUCC24_16845) degS 3280073..3281248 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  JNUCC24_RS16850 (JNUCC24_16850) - 3281469..3282137 (+) 669 WP_012011434.1 YigZ family protein -
  JNUCC24_RS16855 (JNUCC24_16855) - 3282122..3283213 (+) 1092 WP_034623744.1 LCP family protein -
  JNUCC24_RS16860 (JNUCC24_16860) - 3283249..3284316 (-) 1068 WP_024423627.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=576258 JNUCC24_RS16840 WP_008348273.1 3279319..3280008(-) (degU) [Bacillus sp. JNUCC-24]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=576258 JNUCC24_RS16840 WP_008348273.1 3279319..3280008(-) (degU) [Bacillus sp. JNUCC-24]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGCTAAAAGA
AATGGATGCAGACACACTTATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ATTTAGTAAATGAATTCCGACGCTTGGCAACTAGCGGCGTTTCAGCACATCCACAGCATGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTTAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGCTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996