Detailed information NTG0576257

Bioinformatically predicted

Overview

• Name: comFA
• Type: Machinery gene
• Locus tag: JNUCC24_RS16830
• Genome accession: NZ_CP076532
• Coordinates: 3276743..3278140 (-)
• Length: 465 a.a.
• NCBI ID: WP_142927723.1
• Uniprot ID: -
• Organism: Bacillus sp. JNUCC-24
• Function: ssDNA transport into the cell (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3271743..3283140

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
JNUCC24_RS16795 (JNUCC24_16795)	flgL	3271943..3272851 (-)	909	WP_024423617.1	flagellar hook-associated protein FlgL	-
JNUCC24_RS16800 (JNUCC24_16800)	flgK	3272861..3274381 (-)	1521	WP_024423618.1	flagellar hook-associated protein FlgK	-
JNUCC24_RS16805 (JNUCC24_16805)	-	3274397..3274879 (-)	483	WP_034623751.1	flagellar protein FlgN	-
JNUCC24_RS16810 (JNUCC24_16810)	flgM	3274898..3275161 (-)	264	WP_024423620.1	flagellar biosynthesis anti-sigma factor FlgM	-
JNUCC24_RS16815 (JNUCC24_16815)	-	3275241..3275660 (-)	420	WP_024423621.1	TIGR03826 family flagellar region protein	-
JNUCC24_RS16820 (JNUCC24_16820)	comFC	3275718..3276374 (-)	657	WP_253207496.1	ComF family protein	Machinery gene
JNUCC24_RS16825 (JNUCC24_16825)	-	3276401..3276694 (-)	294	WP_024423623.1	competence protein ComFB	-
JNUCC24_RS16830 (JNUCC24_16830)	comFA	3276743..3278140 (-)	1398	WP_142927723.1	DEAD/DEAH box helicase	Machinery gene
JNUCC24_RS16835 (JNUCC24_16835)	-	3278261..3279103 (-)	843	WP_024423625.1	DegV family protein	-
JNUCC24_RS16840 (JNUCC24_16840)	degU	3279319..3280008 (-)	690	WP_008348273.1	two-component system response regulator DegU	Regulator
JNUCC24_RS16845 (JNUCC24_16845)	degS	3280073..3281248 (-)	1176	WP_003213166.1	sensor histidine kinase	Regulator
JNUCC24_RS16850 (JNUCC24_16850)	-	3281469..3282137 (+)	669	WP_012011434.1	YigZ family protein	-

Sequence

Protein

• Length: 465 a.a.
• Molecular weight: 53208.16 Da
• Isoelectric Point: 10.0241

>NTDB_id=576257 JNUCC24_RS16830 WP_142927723.1 3276743..3278140(-) (comFA) [Bacillus sp. JNUCC-24]
MNMDKAMELMRQLHSRHLLTVETKCPQSNLDWLEEKGLVNRSPAIERKANGFTCCRCGVSHKRYFAHSPCEVCQKGCVYC
RSCIMMGKAAECGFLYEWTGPQMVETCRAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMRVCIATPRTDVVLELEPRLRKAFQGVTITVLYGGSSQRFQITPLVITTTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKAMRKNRGVRIYLSATPSKKMTREVSRGKLEAIKIPLRFHEQPLPVPTFHWIGHWKKKLKKNQLPPKVMNWMQ
RHIANRRRILLFVPSIATMKKVTKILREQSLNVEGVSADDPDRKQKVQHFRDYVYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIAKMNDTAAKEFSEKQCGFN

Nucleotide

• Length: 1398 bp

>NTDB_id=576257 JNUCC24_RS16830 WP_142927723.1 3276743..3278140(-) (comFA) [Bacillus sp. JNUCC-24]
TTGAATATGGACAAAGCAATGGAACTAATGCGGCAGCTGCATTCACGCCATCTGCTCACCGTTGAAACAAAGTGCCCACA
GTCCAATTTAGATTGGCTGGAGGAGAAGGGCTTAGTCAATCGGTCTCCAGCCATTGAGAGGAAAGCAAATGGTTTTACAT
GCTGCCGGTGCGGTGTATCACACAAGCGGTATTTCGCTCATTCTCCATGTGAAGTGTGTCAAAAGGGTTGTGTGTACTGT
AGATCATGCATCATGATGGGAAAAGCAGCAGAATGTGGGTTTCTTTATGAATGGACAGGTCCACAAATGGTAGAAACATG
TCGAGCCGAATTAACATGGCAGGGAGAGCTGTCTAAAGGACAAAAAAGAGCGTCAGAAAGAATGATTGAAGCTATTAAAA
ACAAATTTGATCTACTTGTTTGGGCGGTTTGCGGAGCAGGGAAAACGGAAGTGCTTTTTCACGGAATCGAATATGCGTTA
AATCAAGGAATGAGGGTCTGTATTGCGACACCTAGAACAGATGTAGTGCTTGAACTCGAACCACGGCTTAGAAAAGCATT
TCAAGGGGTGACAATTACCGTACTTTACGGAGGCAGTTCTCAAAGGTTTCAAATAACACCGCTTGTGATCACCACAACCC
ACCAGCTGATGAGATACAAAAATGCTTTTGATGTGCTCATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAG
CGTCTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACAGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAGAGGTTTCTCGTGGAAAACTGGAAGCGATAAAAATTCCTTTGCGTTTTCACGAGCAACCATTACCCGTAC
CGACCTTTCATTGGATCGGTCATTGGAAAAAGAAATTAAAAAAGAACCAGCTGCCCCCTAAAGTGATGAATTGGATGCAG
AGACATATTGCAAATAGGAGAAGAATATTACTTTTTGTTCCTTCAATTGCTACCATGAAGAAGGTAACGAAGATTCTTCG
AGAACAATCCTTAAATGTGGAGGGAGTATCTGCCGATGATCCGGATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
TATACGATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTAACGATTCCAAATGTTCAAGTGGGGGTACTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATATCTGGACGGGTAGGCAGACACCCGGATTATTGTACAGGAGA
TGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGCAAAAATGAATGATACGGCTG
CAAAAGAGTTTTCTGAAAAACAGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

• Type III restriction enzyme, res subunit (ResIII) (116-265)

• Helicase conserved C-terminal domain (Helicase_C) (324-420)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comFA	Bacillus subtilis subsp. subtilis str. 168	52.412	98.065	0.514
comFA/cflA	Streptococcus pneumoniae Rx1	38.497	94.409	0.363
comFA/cflA	Streptococcus pneumoniae D39	38.497	94.409	0.363
comFA/cflA	Streptococcus pneumoniae R6	38.497	94.409	0.363
comFA/cflA	Streptococcus pneumoniae TIGR4	38.269	94.409	0.361