Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   MPG79_RS02850 Genome accession   NZ_CP094128
Coordinates   593369..593920 (+) Length   183 a.a.
NCBI ID   WP_245107772.1    Uniprot ID   -
Organism   Helicobacter pylori strain Hpfe055     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 588369..598920
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MPG79_RS02835 (MPG79_02835) cysS 588548..589945 (-) 1398 WP_245107769.1 cysteine--tRNA ligase -
  MPG79_RS02840 (MPG79_02840) murJ 589946..591406 (-) 1461 WP_245107770.1 murein biosynthesis integral membrane protein MurJ -
  MPG79_RS02845 (MPG79_02845) - 591499..593343 (+) 1845 WP_245107771.1 FapA family protein -
  MPG79_RS02850 (MPG79_02850) ruvA 593369..593920 (+) 552 WP_245107772.1 Holliday junction branch migration protein RuvA Machinery gene
  MPG79_RS02855 (MPG79_02855) - 593971..596362 (+) 2392 Protein_542 DUF3519 domain-containing protein -
  MPG79_RS02860 (MPG79_02860) - 596373..596765 (+) 393 Protein_543 hypothetical protein -
  MPG79_RS02865 (MPG79_02865) - 596767..597903 (-) 1137 WP_000462009.1 NAD-binding protein -
  MPG79_RS02870 (MPG79_02870) rpmB 598053..598241 (-) 189 WP_001119000.1 50S ribosomal protein L28 -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20296.95 Da        Isoelectric Point: 9.4311

>NTDB_id=575601 MPG79_RS02850 WP_245107772.1 593369..593920(+) (ruvA) [Helicobacter pylori strain Hpfe055]
MIVGLIGVVEKISALEAHIEVQGVVYGVQVSMRTSALLQVGQKARLKILQVIKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDETSPMRNEVFLALESLGFKSTEINKV
LKTLKPHLSTETAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=575601 MPG79_RS02850 WP_245107772.1 593369..593920(+) (ruvA) [Helicobacter pylori strain Hpfe055]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATTTCTGCTTTAGAAGCGCATATAGAAGTGCAAGGGGTTGTTTATGG
GGTGCAAGTTTCTATGCGAACTTCTGCTTTGCTTCAAGTGGGTCAAAAAGCGCGTTTGAAAATCTTACAAGTGATTAAAG
AAGATGCACATCTTTTATATGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGGCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTTAA
AAGACTCCAGCAAGTCCCAGGCATAGGCAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGTTTTTTCATTCAAG
ATGAAACTAGCCCTATGCGCAATGAAGTCTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCACTGAAATCAATAAAGTT
TTAAAAACCCTAAAACCCCATCTCAGCACCGAAACAGCGATTAAAGAAGCCTTACAGCAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA, C-terminal domain (RuvA_C)

(139-181)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

92.35

100

0.924
  ruvA Streptococcus pneumoniae TIGR4

34.359

100

0.366
  ruvA Streptococcus pneumoniae R6

34.359

100

0.366
  ruvA Streptococcus pneumoniae D39

34.359

100

0.366