Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   KOM03_RS02405 Genome accession   NZ_CP076450
Coordinates   468815..469504 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain GMEKP1     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 463815..474504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KOM03_RS02370 (KOM03_02370) - 464013..464495 (-) 483 WP_003151394.1 flagellar protein FlgN -
  KOM03_RS02375 (KOM03_02375) flgM 464510..464776 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  KOM03_RS02380 (KOM03_02380) - 464846..465265 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  KOM03_RS02385 (KOM03_02385) comFC 465339..466028 (-) 690 WP_197714552.1 phosphoribosyltransferase family protein Machinery gene
  KOM03_RS02390 (KOM03_02390) - 466034..466318 (-) 285 WP_003151389.1 competence protein ComFB -
  KOM03_RS02395 (KOM03_02395) comFA 466376..467761 (-) 1386 WP_060562494.1 DEAD/DEAH box helicase Machinery gene
  KOM03_RS02400 (KOM03_02400) - 467869..468717 (-) 849 WP_003151387.1 DegV family protein -
  KOM03_RS02405 (KOM03_02405) degU 468815..469504 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KOM03_RS02410 (KOM03_02410) degS 469581..470744 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  KOM03_RS02415 (KOM03_02415) - 470967..471614 (+) 648 WP_007614107.1 YigZ family protein -
  KOM03_RS02420 (KOM03_02420) - 471619..472839 (+) 1221 WP_012118574.1 LCP family protein -
  KOM03_RS02425 (KOM03_02425) - 472938..474014 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=575442 KOM03_RS02405 WP_003219701.1 468815..469504(-) (degU) [Bacillus velezensis strain GMEKP1]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=575442 KOM03_RS02405 WP_003219701.1 468815..469504(-) (degU) [Bacillus velezensis strain GMEKP1]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGAGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAATCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTAGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1