Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   KOM03_RS02385 Genome accession   NZ_CP076450
Coordinates   465339..466028 (-) Length   229 a.a.
NCBI ID   WP_197714552.1    Uniprot ID   -
Organism   Bacillus velezensis strain GMEKP1     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 460339..471028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KOM03_RS02350 (KOM03_02350) fliW 460429..460861 (-) 433 Protein_454 flagellar assembly protein FliW -
  KOM03_RS02355 (KOM03_02355) - 460891..461460 (-) 570 WP_007407476.1 DUF6470 family protein -
  KOM03_RS02360 (KOM03_02360) flgL 461551..462468 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  KOM03_RS02365 (KOM03_02365) flgK 462480..463997 (-) 1518 WP_032869556.1 flagellar hook-associated protein FlgK -
  KOM03_RS02370 (KOM03_02370) - 464013..464495 (-) 483 WP_003151394.1 flagellar protein FlgN -
  KOM03_RS02375 (KOM03_02375) flgM 464510..464776 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  KOM03_RS02380 (KOM03_02380) - 464846..465265 (-) 420 WP_025285352.1 TIGR03826 family flagellar region protein -
  KOM03_RS02385 (KOM03_02385) comFC 465339..466028 (-) 690 WP_197714552.1 phosphoribosyltransferase family protein Machinery gene
  KOM03_RS02390 (KOM03_02390) - 466034..466318 (-) 285 WP_003151389.1 competence protein ComFB -
  KOM03_RS02395 (KOM03_02395) comFA 466376..467761 (-) 1386 WP_060562494.1 DEAD/DEAH box helicase Machinery gene
  KOM03_RS02400 (KOM03_02400) - 467869..468717 (-) 849 WP_003151387.1 DegV family protein -
  KOM03_RS02405 (KOM03_02405) degU 468815..469504 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KOM03_RS02410 (KOM03_02410) degS 469581..470744 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25157.77 Da        Isoelectric Point: 8.2927

>NTDB_id=575440 KOM03_RS02385 WP_197714552.1 465339..466028(-) (comFC) [Bacillus velezensis strain GMEKP1]
MNCLLCDSPISSSLTWRSLFSLAPGQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=575440 KOM03_RS02385 WP_197714552.1 465339..466028(-) (comFC) [Bacillus velezensis strain GMEKP1]
CTGAATTGTTTATTGTGTGATTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCGGGGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGTCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGACGATATTTATACGACGGGCGCCACACTGCATCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(166-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.793

99.127

0.603