Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   KO461_RS06255 Genome accession   NZ_CP076449
Coordinates   1231747..1232268 (+) Length   173 a.a.
NCBI ID   WP_005562086.1    Uniprot ID   A0AAC8Y0V5
Organism   Aggregatibacter actinomycetemcomitans strain CU1000N     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1226747..1237268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KO461_RS06215 (KO461_06210) tolQ 1226866..1227555 (+) 690 WP_005545584.1 protein TolQ -
  KO461_RS06220 (KO461_06215) tolR 1227641..1228063 (+) 423 WP_005542289.1 colicin uptake protein TolR -
  KO461_RS06225 (KO461_06220) tolA 1228080..1229246 (+) 1167 WP_005564381.1 cell envelope integrity protein TolA -
  KO461_RS06230 (KO461_06225) tolB 1229281..1230561 (+) 1281 WP_005544509.1 Tol-Pal system beta propeller repeat protein TolB -
  KO461_RS06235 (KO461_06230) pal 1230576..1231043 (+) 468 WP_005544510.1 peptidoglycan-associated lipoprotein Pal -
  KO461_RS06255 (KO461_06250) comN 1231747..1232268 (+) 522 WP_005562086.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  KO461_RS06260 (KO461_06255) - 1232255..1232998 (+) 744 WP_033001977.1 type II secretion system protein J -
  KO461_RS06265 (KO461_06260) - 1232995..1233690 (+) 696 WP_005537951.1 DUF2572 family protein -
  KO461_RS06270 (KO461_06265) comQ 1233665..1233967 (+) 303 WP_005554585.1 DUF5374 domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19865.08 Da        Isoelectric Point: 8.7359

>NTDB_id=575431 KO461_RS06255 WP_005562086.1 1231747..1232268(+) (comN) [Aggregatibacter actinomycetemcomitans strain CU1000N]
MQKGFTLLEMLIALFIISLLLTLALPAWQQHSQQTILQKEQQKLYVFLRQIQARVENSTDIWLLLANRDPVGKRWCLTAQ
IKNSHLCDCLNPVACPQNVFAHFYYPAFAETVLVSKRYYPLEFTRLSGIRNTTSTTCFVLQANQQRTLFSFFNVGSLKLK
GNQSLSACVNDEE

Nucleotide


Download         Length: 522 bp        

>NTDB_id=575431 KO461_RS06255 WP_005562086.1 1231747..1232268(+) (comN) [Aggregatibacter actinomycetemcomitans strain CU1000N]
ATGCAAAAAGGATTCACTTTGCTGGAAATGTTAATTGCATTATTTATTATCAGCCTGTTGCTGACGCTTGCTTTACCGGC
ATGGCAACAGCATTCGCAACAAACTATTCTGCAAAAAGAACAACAAAAACTTTATGTCTTTCTTCGTCAAATTCAGGCGC
GCGTGGAAAATTCTACGGACATCTGGTTGTTATTGGCAAATCGTGATCCTGTAGGAAAGCGCTGGTGTTTGACGGCGCAA
ATTAAAAATAGCCATTTGTGTGACTGTTTAAATCCTGTTGCTTGCCCGCAAAATGTTTTCGCCCATTTTTATTATCCCGC
TTTTGCTGAAACCGTGTTGGTGAGCAAGCGTTATTATCCTTTGGAGTTTACCCGTTTAAGTGGTATTCGGAATACGACTT
CTACCACTTGTTTTGTGCTACAAGCCAATCAGCAGCGTACTTTGTTTTCGTTCTTTAATGTGGGCAGTTTGAAATTAAAA
GGTAATCAATCTTTGAGTGCTTGCGTCAATGATGAAGAATAG

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

59.172

97.688

0.578